RNA–Protein interactions for RNA: ENST00000565507.5

SCAPER-215, Transcript of S-phase cyclin A associated protein in the ER, human

TSL 5

Gene SCAPER, Length 2,627 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCAPER-215	ENST00000565507	TM9SF1	O15321	606 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	MED7	O43513	233 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	CBX6	O95503	412 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	TNNC2	P02585	160 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	EIF3E	P60228	445 aa	Known RBP	13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	DPYSL3	Q14195	570 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	CTC1	Q2NKJ3	1217 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	BBS9	Q3SYG4	887 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	ATF7IP2	Q5U623	682 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	NLRP9	Q7RTR0	991 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	FBXO16	Q8IX29	292 aa	Predicted RBP	13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	PDIK1L	Q8N165	341 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	KCTD6	Q8NC69	237 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	MCRS1	Q96EZ8	462 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	FAM167A	Q96KS9	214 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	VPS11	Q9H270	941 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	KCNH4	Q9UQ05	1017 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	GOLGA8R	I6L899	631 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	ENDOD1	O94919	500 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	TRUB2	O95900	331 aa	Known RBP	13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	GJB1	P08034	283 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	RBP3	P10745	1247 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	TSHR	P16473	764 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	GM2A	P17900	193 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	GABRB2	P47870	512 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	HSDL1	Q3SXM5	330 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	SH2D5	Q6ZV89	423 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	PALM2	Q8IXS6	379 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	C1orf127	Q8N9H9	656 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	FAM13C	Q8NE31	585 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	CXorf38	Q8TB03	319 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	ZNF398	Q8TD17	642 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	PTPRN2	Q92932	1015 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	RSRC1	Q96IZ7	334 aa	Known RBP	13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	ZNF668	Q96K58	619 aa	Predicted RBP	13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	PEBP4	Q96S96	227 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	KLF6	Q99612	283 aa	Predicted RBP	13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	TBC1D10A	Q9BXI6	508 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	NPHS2	Q9NP85	383 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	PDGFC	Q9NRA1	345 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	NKX1-2	Q9UD57	310 aa	Predicted RBP	13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	USP18	Q9UMW8	372 aa		13.76	□□□□□ -0.21
SCAPER-215	ENST00000565507	MGAM	O43451	1857 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	WDR91	A4D1P6	747 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	GAS2	O43903	313 aa	Known RBP	13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	CXCL8	P10145	99 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	ATP2A2	P16615	1042 aa	Known RBP	13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	CLNS1A	P54105	237 aa	Known RBP	13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	SLC8A3	P57103	927 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	PPIL2	Q13356	520 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	TAF1B	Q53T94	588 aa	Predicted RBP	13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	ZNF449	Q6P9G9	518 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	RFX6	Q8HWS3	928 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	SPATA18	Q8TC71	538 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	ALKBH8	Q96BT7	664 aa	Known RBP	13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	GPR20	Q99678	358 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	ELOVL4	Q9GZR5	314 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	C2orf40	Q9H1Z8	148 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	SMYD3	Q9H7B4	428 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	SLC5A4	Q9NY91	659 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	ANK1	P16157	1881 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	MKI67	P46013	3256 aa	Known RBP	13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	LGR5	O75473	907 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	KRT19	P08727	400 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	DHRS4L1	P0CG22	281 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	ETV4	P43268	484 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	GPD2	P43304	727 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	RNASEL	Q05823	741 aa	Known RBP	13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	PTPN11	Q06124	597 aa	Predicted RBP	13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	ACAP1	Q15027	740 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	ZNF667	Q5HYK9	610 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	CLNK	Q7Z7G1	428 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	RFWD2	Q8NHY2	731 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	HSPH1	Q92598	858 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	MIEF2	Q96C03	454 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	CDT1	Q9H211	546 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	MINDY3	Q9H8M7	445 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	CHMP2B	Q9UQN3	213 aa		13.75	□□□□□ -0.21
SCAPER-215	ENST00000565507	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	TCRBV9S1A1T	A0A576	114 aa		13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	CXCL11	O14625	94 aa		13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	MCF2L	O15068	1137 aa		13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	PEX11A	O75192	247 aa		13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	CILP	O75339	1184 aa		13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	MICAL2	O94851	1124 aa		13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	NFIC	P08651	508 aa		13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	IQCF3	P0C7M6	154 aa		13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	ELK3	P41970	407 aa		13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	BASP1	P80723	227 aa	Known RBP	13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	MMRN1	Q13201	1228 aa		13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	NOMO1	Q15155	1222 aa		13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	RAB6C	Q53S08	254 aa		13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	SH3PXD2A	Q5TCZ1	1133 aa		13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	TRNP1	Q6NT89	227 aa		13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	NPNT	Q6UXI9	565 aa		13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	MTDH	Q86UE4	582 aa	Known RBP	13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	SERAC1	Q96JX3	654 aa		13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	CYTH2	Q99418	400 aa		13.74	□□□□□ -0.21
SCAPER-215	ENST00000565507	CALN1	Q9BXU9	219 aa		13.74	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms