RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 DESP17661 470 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 WARSP23381 471 aaKnown RBP9.41□□□□□ -0.9
VPS39-207ENST00000563692 MAN1A1P33908 653 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 CTNNA1P35221 906 aaKnown RBP9.41□□□□□ -0.9
VPS39-207ENST00000563692 LTBRP36941 435 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 MLH1P40692 756 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 GPD2P43304 727 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 LHX1P48742 406 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 PEX5P50542 639 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 RNASE9P60153 205 aaKnown RBP9.41□□□□□ -0.9
VPS39-207ENST00000563692 ERVFC1P60507 584 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 DLX2Q07687 328 aaPredicted RBP9.41□□□□□ -0.9
VPS39-207ENST00000563692 C2orf54Q08AI8 447 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 SMAD2Q15796 467 aaKnown RBP9.41□□□□□ -0.9
VPS39-207ENST00000563692 DUSP6Q16828 381 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 SOWAHAQ2M3V2 549 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 MAP9Q49MG5 647 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 ODF2Q5BJF6 829 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 ARHGAP17Q68EM7 881 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 WDR93Q6P2C0 686 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 DSTYKQ6XUX3 929 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 PHLDB2Q86SQ0 1253 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 ACOT1Q86TX2 421 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 RHOT1Q8IXI2 618 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 VPS52Q8N1B4 723 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 TMEM86AQ8N2M4 240 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 NOA1Q8NC60 698 aaKnown RBP9.41□□□□□ -0.9
VPS39-207ENST00000563692 C3orf20Q8ND61 904 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 CCDC26Q8TAB7 109 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 STK32AQ8WU08 396 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 MAIP1Q8WWC4 291 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 TWNKQ96RR1 684 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 ARFGAP3Q9NP61 516 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 CHORDC1Q9UHD1 332 aaPredicted RBP9.41□□□□□ -0.9
VPS39-207ENST00000563692 RAB21Q9UL25 225 aa9.41□□□□□ -0.9
VPS39-207ENST00000563692 SPTBN5Q9NRC6 3674 aaKnown RBP9.41□□□□□ -0.9
VPS39-207ENST00000563692 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.4□□□□□ -0.9
VPS39-207ENST00000563692 CCDC151A5D8V7 595 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 NT5C1B-RDH14C9J2C7 533 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 PODXLO00592 558 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 PPEF2O14830 753 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 ATP8B1O43520 1251 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 CXCL14O95715 111 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 POMCP01189 267 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 FGGP02679 453 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 ALDH2P05091 517 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 PDGFRBP09619 1106 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 SSR1P43307 286 aaKnown RBP9.4□□□□□ -0.9
VPS39-207ENST00000563692 GABRB2P47870 512 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 GSCP56915 257 aaPredicted RBP9.4□□□□□ -0.9
VPS39-207ENST00000563692 ZP2Q05996 745 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 SOX4Q06945 474 aaPredicted RBP9.4□□□□□ -0.9
VPS39-207ENST00000563692 ORC1Q13415 861 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 ACAP1Q15027 740 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 GOLGA7BQ2TAP0 167 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 C2CD6Q53TS8 623 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 C8orf74Q6P047 294 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 AGMOQ6ZNB7 445 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 LIMS2Q7Z4I7 341 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 MAATS1Q7Z4T9 603 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 DDX53Q86TM3 631 aaKnown RBP9.4□□□□□ -0.9
VPS39-207ENST00000563692 METTL23Q86XA0 190 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 ZDHHC17Q8IUH5 632 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 IFT20Q8IY31 132 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 ADGRF2Q8IZF7 708 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 MRPL43Q8N983 215 aaKnown RBP9.4□□□□□ -0.9
VPS39-207ENST00000563692 ANKRD52Q8NB46 1076 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 SMRP1Q8NCR6 262 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 UBA3Q8TBC4 463 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 SPATA18Q8TC71 538 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 HNRNPLLQ8WVV9 542 aaKnown RBP9.4□□□□□ -0.9
VPS39-207ENST00000563692 CASP10Q92851 521 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 IGSF21Q96ID5 467 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 BTBD6Q96KE9 485 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 ZFP42Q96MM3 310 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 RUNDC3BQ96NL0 473 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 TMEM175Q9BSA9 504 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 NRDE2Q9H7Z3 1164 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 ANKZF1Q9H8Y5 726 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 HMGXB4Q9UGU5 601 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 TSPAN16Q9UKR8 245 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 FAN1Q9Y2M0 1017 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 XIRP2A4UGR9 3374 aa9.4□□□□□ -0.9
VPS39-207ENST00000563692 ANK1P16157 1881 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 SPDYE4A6NLX3 237 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 MEIS3P2A8K0S8 358 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 SPTLC1O15269 473 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 PSTPIP1O43586 416 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 GALTP07902 379 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 CTSAP10619 480 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 HOXB8P17481 243 aaPredicted RBP9.39□□□□□ -0.91
VPS39-207ENST00000563692 ACADSBP45954 432 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 SCNN1GP51170 649 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 CLCNKBP51801 687 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 GRIK3Q13003 919 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 PDCLQ13371 301 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 TUSC3Q13454 348 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 HADHQ16836 314 aaKnown RBP9.39□□□□□ -0.91
VPS39-207ENST00000563692 TMEM31Q5JXX7 168 aa9.39□□□□□ -0.91
VPS39-207ENST00000563692 PPP1R26Q5T8A7 1209 aaPredicted RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms