RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 ZNF202O95125 648 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 HLA-DRAP01903 254 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 MYL1P05976 194 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 CCDC130P13994 396 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 DRD1P21728 446 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 TGM1P22735 817 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 PPP3CCP48454 512 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 PDE6CP51160 858 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 VAMP7P51809 220 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 SLC7A9P82251 487 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 DPYDQ12882 1025 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 PUM1Q14671 1186 aaKnown RBP eCLIP10.86□□□□□ -0.675e-6■■■□□ 14.8
LDLR-214ENST00000560628 C1orf220Q5T0J3 134 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 KRBA2Q6ZNG9 492 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 CEP68Q76N32 757 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 DGLUCYQ7Z3D6 616 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 FAM35AQ86V20 835 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 TMEM174Q8WUU8 243 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 EZH1Q92800 747 aaPredicted RBP10.86□□□□□ -0.67
LDLR-214ENST00000560628 CD101Q93033 1021 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 FBXO32Q969P5 355 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 TNIP3Q96KP6 325 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 SLITRK1Q96PX8 696 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 SCAND2PQ9GZW5 306 aaPredicted RBP10.86□□□□□ -0.67
LDLR-214ENST00000560628 MMRN2Q9H8L6 949 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 TRAF3IP3Q9Y228 551 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 ATP6V1DQ9Y5K8 247 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 CPQQ9Y646 472 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 SPTBN4Q9H254 2564 aa10.86□□□□□ -0.67
LDLR-214ENST00000560628 ATP8B3O60423 1300 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 A0A1W2PQ27 194 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 A0A1W2PQ64 194 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 A0A1W2PQD8 194 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 ANTXRLA6NF34 631 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 IKBKBO14920 756 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 AP1G2O75843 785 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 AKAP3O75969 853 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 BEST1O76090 585 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 RTN3O95197 1032 aaPredicted RBP10.85□□□□□ -0.67
LDLR-214ENST00000560628 NFATC1O95644 943 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 OAS1P00973 400 aaKnown RBP10.85□□□□□ -0.67
LDLR-214ENST00000560628 TRIM49P0CI25 452 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 TRIM49CP0CI26 452 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 MBL2P11226 248 aaPredicted RBP10.85□□□□□ -0.67
LDLR-214ENST00000560628 P4HA1P13674 534 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 TCF3P15923 654 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 PFKLP17858 780 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 NR2F2P24468 414 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 HOXA6P31267 233 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 CNR2P34972 360 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 PIK3CAP42336 1068 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 GCLMP48507 274 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 NDST1P52848 882 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 FOXK2Q01167 660 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 PPP3CAQ08209 521 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 ADAM9Q13443 819 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 LAIR1Q6GTX8 287 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 ERMP1Q7Z2K6 904 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.85□□□□□ -0.67
LDLR-214ENST00000560628 FILIP1Q7Z7B0 1213 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 WDR5BQ86VZ2 330 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 ADGRG2Q8IZP9 1017 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 FUKQ8N0W3 1084 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 GPR161Q8N6U8 529 aaKnown RBP10.85□□□□□ -0.67
LDLR-214ENST00000560628 C12orf29Q8N999 325 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 RPLP0P6Q8NHW5 317 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 SLC2A14Q8TDB8 520 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 EXOC4Q96A65 974 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 EEF2KMTQ96G04 330 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 HHIPQ96QV1 700 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 KRT82Q9NSB4 513 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 FAM49BQ9NUQ9 324 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 CFAP97Q9P2B7 532 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 HMGXB4Q9UGU5 601 aa10.85□□□□□ -0.67
LDLR-214ENST00000560628 TNFRSF10BO14763 440 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 AXIN1O15169 862 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 COCHO43405 550 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 KIF20AO95235 890 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 ASS1P00966 412 aaKnown RBP10.84□□□□□ -0.67
LDLR-214ENST00000560628 RETP07949 1114 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 KRT13P13646 458 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 ADORA2BP29275 332 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 OPRD1P41143 372 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 ASPAP45381 313 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 SLC6A11P48066 632 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 PGFP49763 221 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 SLC5A3P53794 718 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 SEC13P55735 322 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 MAP3K7CLP57077 242 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 DHCR24Q15392 516 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 FBXO43Q4G163 708 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 C2orf27AQ580R0 203 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 HECTD3Q5T447 861 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 FAM186BQ8IYM0 893 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 SMYD4Q8IYR2 804 aaPredicted RBP10.84□□□□□ -0.67
LDLR-214ENST00000560628 CRYBG2Q8N1P7 616 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 FAM160A2Q8N612 972 aaPredicted RBP10.84□□□□□ -0.67
LDLR-214ENST00000560628 ZMIZ2Q8NF64 920 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 TAF4BQ92750 862 aa10.84□□□□□ -0.67
LDLR-214ENST00000560628 SMARCD1Q96GM5 515 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms