RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 SMAD2Q15796 467 aaKnown RBP5.54□□□□□ -1.52
LDLR-209ENST00000558528 DGKDQ16760 1214 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 EDRF1Q3B7T1 1238 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 DUSP28Q4G0W2 176 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 ZNF484Q5JVG2 852 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 ISM2Q6H9L7 571 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 KLHL10Q6JEL2 608 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 USP37Q86T82 979 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 DENND1CQ8IV53 801 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 DRC7Q8IY82 874 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 GRAMD1CQ8IYS0 662 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 AOPEPQ8N6M6 819 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 ZBTB34Q8NCN2 500 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 PPTC7Q8NI37 304 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 PIGOQ8TEQ8 1089 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 NELFBQ8WX92 580 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 GLG1Q92896 1179 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 P2RX5Q93086 422 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 DNAJC19Q96DA6 116 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 IQCDQ96DY2 449 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 PPP1R9BQ96SB3 815 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 ACO2Q99798 780 aaKnown RBP5.54□□□□□ -1.52
LDLR-209ENST00000558528 KATNAL1Q9BW62 490 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 AP5M1Q9H0R1 490 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 ST6GALNAC4Q9H4F1 302 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 MRPL44Q9H9J2 332 aaKnown RBP5.54□□□□□ -1.52
LDLR-209ENST00000558528 ATP6V0A4Q9HBG4 840 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 SLC39A2Q9NP94 309 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 ACSS2Q9NR19 701 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 TOPORSQ9NS56 1045 aaPredicted RBP5.54□□□□□ -1.52
LDLR-209ENST00000558528 CATSPERZQ9NTU4 200 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 ERAP1Q9NZ08 941 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 IMPACTQ9P2X3 320 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 NFE2L3Q9Y4A8 694 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 GPR45Q9Y5Y3 372 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 CACNA1BQ00975 2339 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 EMSYQ7Z589 1322 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 ZFHX4Q86UP3 3567 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 GSTTP1A0A1W2PQM5 241 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 RRN3P2A6NIE6 340 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 LRRC10BA6NIK2 292 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 FOXN3O00409 490 aaPredicted RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 PDXKO00764 312 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 CETN3O15182 167 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 KDM1AO60341 852 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 MSCO60682 206 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 H2AFYO75367 372 aaKnown RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 TUSC2O75896 110 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 GCNT3O95395 438 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 ADCY5O95622 1261 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 SNAI1O95863 264 aaPredicted RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 CCNE2O96020 404 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 CYP17A1P05093 508 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 PTMAP06454 111 aaKnown RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 GNAT1P11488 350 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 CCL5P13501 91 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 PLS3P13797 630 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 AKR1A1P14550 325 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 CAPN2P17655 700 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 RPL17P18621 184 aaKnown RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 ENDOUP21128 410 aaKnown RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 TCF7P36402 384 aaPredicted RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 KIR3DL1P43629 444 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 POLGP54098 1239 aaPredicted RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 UBASH3AP57075 661 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 GSDMDP57764 484 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 PSMC6P62333 389 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 STK4Q13043 487 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 DMP1Q13316 513 aaPredicted RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 TFDP1Q14186 410 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 MXD4Q14582 209 aaPredicted RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 ZNF267Q14586 743 aaPredicted RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 NFIL3Q16649 462 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 LY6KQ17RY6 165 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 KNOP1Q1ED39 458 aaKnown RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 BMT2Q1RMZ1 405 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 KIAA0753Q2KHM9 967 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 CENPPQ6IPU0 288 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 TAPT1Q6NXT6 567 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 MZT2AQ6P582 158 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 C11orf57Q6ZUT1 292 aaPredicted RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 ZNF720Q7Z2F6 126 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 KCNK18Q7Z418 384 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 UBE3DQ7Z6J8 389 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 DHX40Q8IX18 779 aaKnown RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 CISD2Q8N5K1 135 aaKnown RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 CAMKK1Q8N5S9 505 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 CSGALNACT2Q8N6G5 542 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 KIAA1958Q8N8K9 716 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 USP38Q8NB14 1042 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 FAM156AQ8NDB6 213 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 OR6J1Q8NGC5 347 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 UBASH3BQ8TF42 649 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 U2AF1L4Q8WU68 220 aaKnown RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 MYLIPQ8WY64 445 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 JADE3Q92613 823 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 USP6NLQ92738 828 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 ERCC4Q92889 916 aaPredicted RBP5.53□□□□□ -1.52
LDLR-209ENST00000558528 KCNN1Q92952 543 aa5.53□□□□□ -1.52
LDLR-209ENST00000558528 MVB12AQ96EY5 273 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms