RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 CPA5Q8WXQ8 436 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 IRGQQ8WZA9 623 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 KHSRPQ92945 711 aaKnown RBP eCLIP10.1□□□□□ -0.79
LIMA1-211ENST00000552338 TRMT2BQ96GJ1 504 aaKnown RBP10.1□□□□□ -0.79
LIMA1-211ENST00000552338 PPP1R13BQ96KQ4 1090 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 KCNK16Q96T55 309 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 PDCL3Q9H2J4 239 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 ZNF576Q9H609 170 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 TMEM51Q9NW97 253 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 ADAM22Q9P0K1 906 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 UVRAGQ9P2Y5 699 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 DPP7Q9UHL4 492 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 PPP2R2CQ9Y2T4 447 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 ASB3Q9Y575 518 aa10.1□□□□□ -0.79
LIMA1-211ENST00000552338 MYO16Q9Y6X6 1858 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.09□□□□□ -0.79
LIMA1-211ENST00000552338 RCCD1A6NED2 376 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 GOLGA6L9A6NEM1 432 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 SIGLEC16A6NMB1 481 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 F8VP50 259 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 C2CD2LO14523 706 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 CCP110O43303 1012 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 ZSCAN12O43309 604 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 CLASP2O75122 1294 aaKnown RBP10.09□□□□□ -0.79
LIMA1-211ENST00000552338 RTN3O95197 1032 aaPredicted RBP10.09□□□□□ -0.79
LIMA1-211ENST00000552338 RPL17P18621 184 aaKnown RBP10.09□□□□□ -0.79
LIMA1-211ENST00000552338 ADORA2BP29275 332 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 ARHGAP25P42331 645 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 MAP3K7CLP57077 242 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 DUSP4Q13115 394 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 COL19A1Q14993 1142 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 OLFML1Q6UWY5 402 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 CCDC149Q6ZUS6 474 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 SLC26A9Q7LBE3 791 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 BHLHA9Q7RTU4 235 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 NUP93Q8N1F7 819 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 FNIP1Q8TF40 1166 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 AUTS2Q8WXX7 1259 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 RFFLQ8WZ73 363 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 OVCA2Q8WZ82 227 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 TRIM44Q96DX7 344 aaPredicted RBP10.09□□□□□ -0.79
LIMA1-211ENST00000552338 MED10Q9BTT4 135 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 TSGA10Q9BZW7 698 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 FBXO44Q9H4M3 255 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 ENTPD7Q9NQZ7 604 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 KRT82Q9NSB4 513 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 EHD2Q9NZN4 543 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 LCMT1Q9UIC8 334 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 TMEM59LQ9UK28 342 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 PYCARDQ9ULZ3 195 aa10.09□□□□□ -0.79
LIMA1-211ENST00000552338 RANBP2P49792 3224 aaKnown RBP10.09□□□□□ -0.79
LIMA1-211ENST00000552338 DOCK6Q96HP0 2047 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 SOBPA7XYQ1 873 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 E5RJQ4 531 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 PAPSS1O43252 624 aaPredicted RBP10.08□□□□□ -0.8
LIMA1-211ENST00000552338 SART1O43290 800 aaKnown RBP10.08□□□□□ -0.8
LIMA1-211ENST00000552338 KRT86O43790 486 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 GLUD1P00367 558 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 ERBB2P04626 1255 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 HNRNPA1P09651 372 aaKnown RBP eCLIP10.08□□□□□ -0.8
LIMA1-211ENST00000552338 ZDHHC11BP0C7U3 371 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 CSH1P0DML2 217 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 CSH2P0DML3 217 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 HMGA1P17096 107 aaKnown RBP10.08□□□□□ -0.8
LIMA1-211ENST00000552338 ATF6P18850 670 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 KLRC2P26717 231 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 GRIK1P39086 918 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 PPP3CCP48454 512 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 DAOAP59103 153 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 MRPS5P82675 430 aaKnown RBP10.08□□□□□ -0.8
LIMA1-211ENST00000552338 SLC6A3Q01959 620 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 PLD1Q13393 1074 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 MAMLD1Q13495 774 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 ACAP1Q15027 740 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 PLPP4Q5VZY2 271 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 DENND5BQ6ZUT9 1274 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 BNIPLQ7Z465 357 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 PASD1Q8IV76 773 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 CCAR2Q8N163 923 aaKnown RBP10.08□□□□□ -0.8
LIMA1-211ENST00000552338 TTC9BQ8N6N2 239 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 KREMEN2Q8NCW0 462 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 ACRBPQ8NEB7 543 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 CMASQ8NFW8 434 aaPredicted RBP10.08□□□□□ -0.8
LIMA1-211ENST00000552338 IPO4Q8TEX9 1081 aaKnown RBP10.08□□□□□ -0.8
LIMA1-211ENST00000552338 ARNTL2Q8WYA1 636 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 CTNNBL1Q8WYA6 563 aaPredicted RBP10.08□□□□□ -0.8
LIMA1-211ENST00000552338 NT5C3BQ969T7 300 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 PSMG2Q969U7 264 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 PACSIN1Q9BY11 444 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 LACRTQ9GZZ8 138 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 THAP2Q9H0W7 228 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 TTYH1Q9H313 450 aaPredicted RBP10.08□□□□□ -0.8
LIMA1-211ENST00000552338 MRPL47Q9HD33 250 aaKnown RBP10.08□□□□□ -0.8
LIMA1-211ENST00000552338 PARVAQ9NVD7 372 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 ZDHHC7Q9NXF8 308 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 ABI2Q9NYB9 513 aaPredicted RBP10.08□□□□□ -0.8
LIMA1-211ENST00000552338 SCML2Q9UQR0 700 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 INSL5Q9Y5Q6 135 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 SCINQ9Y6U3 715 aa10.08□□□□□ -0.8
LIMA1-211ENST00000552338 TMEM191CA6NGB0 347 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms