RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 TXLNBQ8N3L3 684 aa4.35□□□□□ -1.71
LIMA1-208ENST00000551691 PPHLN1Q8NEY8 458 aaKnown RBP4.35□□□□□ -1.71
LIMA1-208ENST00000551691 BRIX1Q8TDN6 353 aaKnown RBP4.35□□□□□ -1.71
LIMA1-208ENST00000551691 KIAA1191Q96A73 305 aa4.35□□□□□ -1.71
LIMA1-208ENST00000551691 ARL8AQ96BM9 186 aa4.35□□□□□ -1.71
LIMA1-208ENST00000551691 APIPQ96GX9 242 aa4.35□□□□□ -1.71
LIMA1-208ENST00000551691 CLPTM1LQ96KA5 538 aa4.35□□□□□ -1.71
LIMA1-208ENST00000551691 RBM15Q96T37 977 aaKnown RBP eCLIP4.35□□□□□ -1.71
LIMA1-208ENST00000551691 KRTAP3-1Q9BYR8 98 aa4.35□□□□□ -1.71
LIMA1-208ENST00000551691 C9orf78Q9NZ63 289 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-208ENST00000551691 ABCF2Q9UG63 623 aa4.35□□□□□ -1.71
LIMA1-208ENST00000551691 EVLQ9UI08 416 aaPredicted RBP4.35□□□□□ -1.71
LIMA1-208ENST00000551691 ST6GALNAC2Q9UJ37 374 aa4.35□□□□□ -1.71
LIMA1-208ENST00000551691 DENND2AQ9ULE3 1009 aa4.35□□□□□ -1.71
LIMA1-208ENST00000551691 PCDHGB2Q9Y5G2 931 aa4.35□□□□□ -1.71
LIMA1-208ENST00000551691 ZHX2Q9Y6X8 837 aa4.35□□□□□ -1.71
LIMA1-208ENST00000551691 MED23Q9ULK4 1368 aa4.35□□□□□ -1.71
LIMA1-208ENST00000551691 EPOPA6NHQ4 379 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 APOL1O14791 398 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 ADAMTS3O15072 1205 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 EPB41L2O43491 1005 aaKnown RBP4.34□□□□□ -1.71
LIMA1-208ENST00000551691 TLR5O60602 858 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 PHF2O75151 1096 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 IL18RAPO95256 599 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 KITP10721 976 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 ZNF20P17024 532 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 DDIT3P35638 169 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 STAT5AP42229 794 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 MMP14P50281 582 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 GEMIN4P57678 1058 aaKnown RBP4.34□□□□□ -1.71
LIMA1-208ENST00000551691 MGAT2Q10469 447 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 FOXD4Q12950 439 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-208ENST00000551691 MAN2A1Q16706 1144 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 DGKDQ16760 1214 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 KRT24Q2M2I5 525 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 AAK1Q2M2I8 961 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 CD300LDQ6UXZ3 194 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 LDHAL6AQ6ZMR3 332 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 ASCL5Q7RTU5 278 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 KANSL1Q7Z3B3 1105 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 HEATR3Q7Z4Q2 680 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 PCGF5Q86SE9 256 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 NKAPQ8N5F7 415 aaKnown RBP4.34□□□□□ -1.71
LIMA1-208ENST00000551691 TRPV1Q8NER1 839 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 SMCR8Q8TEV9 937 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-208ENST00000551691 SUCLG2Q96I99 432 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 DYDC2Q96IM9 177 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 TMX3Q96JJ7 454 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 UNKQ9C0B0 810 aaKnown RBP4.34□□□□□ -1.71
LIMA1-208ENST00000551691 OR10A5Q9H207 317 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 ZMAT3Q9HA38 289 aaKnown RBP4.34□□□□□ -1.71
LIMA1-208ENST00000551691 AGO4Q9HCK5 861 aaKnown RBP4.34□□□□□ -1.71
LIMA1-208ENST00000551691 GALNT8Q9NY28 637 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 MAP3K20Q9NYL2 800 aaKnown RBP4.34□□□□□ -1.71
LIMA1-208ENST00000551691 FLRT1Q9NZU1 646 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 BTBD7Q9P203 1132 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 LRFN1Q9P244 771 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 ZNF69Q9UC07 566 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 PCDHA3Q9Y5H8 950 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 MTCH2Q9Y6C9 303 aa4.34□□□□□ -1.71
LIMA1-208ENST00000551691 ANKRD11Q6UB99 2663 aaPredicted RBP4.34□□□□□ -1.72
LIMA1-208ENST00000551691 RIF1Q5UIP0 2472 aaKnown RBP4.33□□□□□ -1.72
LIMA1-208ENST00000551691 TPRP12270 2363 aaKnown RBP4.33□□□□□ -1.72
LIMA1-208ENST00000551691 AK9Q5TCS8 1911 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 PLXNB2O15031 1838 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 ZNF536O15090 1300 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 A0A087WV62 115 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 A0A088AWK7 358 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 CXCL11O14625 94 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 FFAR2O15552 330 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 FRS3O43559 492 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 NCK2O43639 380 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 SGTAO43765 313 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 CUTAO60888 179 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 EDNRBP24530 442 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 ADSLP30566 484 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-208ENST00000551691 WASP42768 502 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 KCNJ5P48544 419 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 CASP5P51878 434 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 IRX6P78412 446 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-208ENST00000551691 CDC42EP1Q00587 391 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 PFKPQ01813 784 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 TNFAIP1Q13829 316 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 CNGA2Q16280 664 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 WDR72Q3MJ13 1102 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 CCDC152Q4G0S7 254 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 KHDC1LQ5JSQ8 128 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 CC2D1BQ5T0F9 858 aaKnown RBP4.33□□□□□ -1.72
LIMA1-208ENST00000551691 FKBP15Q5T1M5 1219 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 SWSAP1Q6NVH7 229 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 TLDC1Q6P9B6 456 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 FBXO38Q6PIJ6 1188 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 TMC5Q6UXY8 1006 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 GAREM2Q75VX8 874 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 RSRC2Q7L4I2 434 aaKnown RBP4.33□□□□□ -1.72
LIMA1-208ENST00000551691 MAATS1Q7Z4T9 603 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 BMP8AQ7Z5Y6 402 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 ZFPM1Q8IX07 1006 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 FAM126BQ8IXS8 530 aa4.33□□□□□ -1.72
LIMA1-208ENST00000551691 SLC16A11Q8NCK7 471 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms