RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 ZNF268Q14587 947 aaPredicted RBP11.61□□□□□ -0.55
CUX1-212ENST00000547394 EFTUD2Q15029 972 aaKnown RBP eCLIP11.61□□□□□ -0.558e-8■■■■□ 20.9
CUX1-212ENST00000547394 SMAD1Q15797 465 aaKnown RBP11.61□□□□□ -0.55
CUX1-212ENST00000547394 HADHQ16836 314 aaKnown RBP11.61□□□□□ -0.55
CUX1-212ENST00000547394 NBPF20Q3BBV1 942 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 MSS51Q4VC12 460 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 OSTM1Q86WC4 334 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 ZBED8Q8IZ13 594 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 MYCBPAPQ8TBZ2 947 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 SPATA18Q8TC71 538 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 KHSRPQ92945 711 aaKnown RBP eCLIP11.61□□□□□ -0.553e-7■■■■□ 19.9
CUX1-212ENST00000547394 VRTNQ9H8Y1 702 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 ELNP15502 786 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 NDUFV1P49821 464 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 AGBL2Q5U5Z8 902 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 GDF6Q6KF10 455 aaPredicted RBP11.61□□□□□ -0.55
CUX1-212ENST00000547394 OLFML1Q6UWY5 402 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 PYROXD2Q8N2H3 581 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 NIPA2Q8N8Q9 360 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 GDAP1Q8TB36 358 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 ZNF473Q8WTR7 871 aaKnown RBP11.61□□□□□ -0.55
CUX1-212ENST00000547394 TRIB2Q92519 343 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 RUNDC3BQ96NL0 473 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 GAD1Q99259 594 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 PRMT1Q99873 361 aaKnown RBP11.61□□□□□ -0.55
CUX1-212ENST00000547394 RHOBTB2Q9BYZ6 727 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 EPN3Q9H201 632 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 KIF9Q9HAQ2 790 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 KCNK9Q9NPC2 374 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 ZSWIM8A7E2V4 1837 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 CASTOR2A6NHX0 329 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 AVILO75366 819 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 RPS6KA5O75582 802 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 MAGEA4P43358 317 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 CTCFP49711 727 aaPredicted RBP11.61□□□□□ -0.55
CUX1-212ENST00000547394 CPT1AP50416 773 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 ZNF143P52747 638 aaPredicted RBP11.61□□□□□ -0.55
CUX1-212ENST00000547394 EIF3BP55884 814 aaKnown RBP11.61□□□□□ -0.55
CUX1-212ENST00000547394 EIF3EP60228 445 aaKnown RBP11.61□□□□□ -0.55
CUX1-212ENST00000547394 BASP1P80723 227 aaKnown RBP11.61□□□□□ -0.55
CUX1-212ENST00000547394 WSCD1Q658N2 575 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 HIBCHQ6NVY1 386 aaPredicted RBP11.61□□□□□ -0.55
CUX1-212ENST00000547394 RGMBQ6NW40 437 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 ALKAL1Q6UXT8 129 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 EXOC3L1Q86VI1 746 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 ADAM32Q8TC27 787 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 RSAD2Q8WXG1 361 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 FAM149B1Q96BN6 582 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 VPS37BQ9H9H4 285 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 CWC15Q9P013 229 aaKnown RBP11.61□□□□□ -0.55
CUX1-212ENST00000547394 HESX1Q9UBX0 185 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 CDY2AQ9Y6F7 541 aa11.61□□□□□ -0.55
CUX1-212ENST00000547394 PTGESO14684 152 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 PRPSAP2O60256 369 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 KRT7P08729 469 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 RBP3P10745 1247 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 RPL22P35268 128 aaKnown RBP11.6□□□□□ -0.55
CUX1-212ENST00000547394 RGS2P41220 211 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 TAP1Q03518 808 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 PDIA2Q13087 525 aaKnown RBP11.6□□□□□ -0.55
CUX1-212ENST00000547394 MPP2Q14168 576 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 KRT81Q14533 505 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 TMED2Q15363 201 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 FNBP1LQ5T0N5 605 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 LRRC38Q5VT99 294 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 SRRM1Q8IYB3 904 aaKnown RBP11.6□□□□□ -0.55
CUX1-212ENST00000547394 ARHGEF2Q92974 986 aaKnown RBP11.6□□□□□ -0.55
CUX1-212ENST00000547394 MIOSQ9NXC5 875 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 DDX56Q9NY93 547 aaKnown RBP11.6□□□□□ -0.55
CUX1-212ENST00000547394 FEZ2Q9UHY8 353 aaPredicted RBP11.6□□□□□ -0.55
CUX1-212ENST00000547394 VGLL3A8MV65 326 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 F8W810 466 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 DNALI1O14645 258 aaPredicted RBP11.6□□□□□ -0.55
CUX1-212ENST00000547394 HGSO14964 777 aaPredicted RBP11.6□□□□□ -0.55
CUX1-212ENST00000547394 SRLQ86TD4 932 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 SLC35B2Q8TB61 432 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 SLC35F5Q8WV83 523 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 USP6NLQ92738 828 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 TRIM56Q9BRZ2 755 aaKnown RBP11.6□□□□□ -0.55
CUX1-212ENST00000547394 CNPY3Q9BT09 278 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 SNX25Q9H3E2 840 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 ASNSD1Q9NWL6 643 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 CNTN3Q9P232 1028 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 ST3GAL5Q9UNP4 418 aa11.6□□□□□ -0.55
CUX1-212ENST00000547394 H7C0C1 242 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 HAS3O00219 553 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 EBAG9O00559 213 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 SPAG7O75391 227 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 TMEM63AO94886 807 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 SSTR1P30872 391 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 GABRB2P47870 512 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 ATP5OP48047 213 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 FLT3LGP49771 235 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 LILRA4P59901 499 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 DPYSL3Q14195 570 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 KIAA0319Q5VV43 1072 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 DARS2Q6PI48 645 aaKnown RBP11.59□□□□□ -0.55
CUX1-212ENST00000547394 FAM131BQ86XD5 332 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 ADGRF2Q8IZF7 708 aa11.59□□□□□ -0.55
CUX1-212ENST00000547394 APPL2Q8NEU8 664 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms