RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	FAM49A	Q9H0Q0	323 aa	Predicted RBP	13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	PDZD7	Q9H5P4	517 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	ZWILCH	Q9H900	591 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	PPME1	Q9Y570	386 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	CLUH	O75153	1309 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	EIF4E1B	A6NMX2	242 aa	Known RBP	13.09	□□□□□ -0.31
RNF4-222	ENST00000541204		H3BRB1	525 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	GOLGA8R	I6L899	631 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	PEX11A	O75192	247 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	ITGBL1	O95965	494 aa	Predicted RBP	13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	CALB1	P05937	261 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	ADRA1D	P25100	572 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	POLR2B	P30876	1174 aa	Known RBP	13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	RFC1	P35251	1148 aa	Predicted RBP	13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	CDKN2B	P42772	138 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	GDF10	P55107	478 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	GEMIN4	P57678	1058 aa	Known RBP	13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	CCNA1	P78396	465 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	TAF11	Q15544	211 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	HIF1A	Q16665	826 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	KIZ	Q2M2Z5	673 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	PTPN20	Q4JDL3	420 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	MSS51	Q4VC12	460 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	FNBP1L	Q5T0N5	605 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	ANKRD22	Q5VYY1	191 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	KIAA0319L	Q8IZA0	1049 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	INPP5D	Q92835	1189 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	TRIM6	Q9C030	488 aa	Predicted RBP	13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	CXCL16	Q9H2A7	254 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	TUT1	Q9H6E5	874 aa	Known RBP	13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	RNPEPL1	Q9HAU8	725 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	PRMT7	Q9NVM4	692 aa	Predicted RBP	13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	SLC24A2	Q9UI40	661 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	RABGEF1	Q9UJ41	708 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	SHOC2	Q9UQ13	582 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	NUMBL	Q9Y6R0	609 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	LRRC37A2	A6NM11	1700 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	SI	P14410	1827 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	SNAI1	O95863	264 aa	Predicted RBP	13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	ITGAV	P06756	1048 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	GNAZ	P19086	355 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	CTCF	P49711	727 aa	Predicted RBP	13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	CCNG1	P51959	295 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	OVGP1	Q12889	678 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	PLEKHG4	Q58EX7	1191 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	FAM182A	Q5T1J6	154 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	JOSD2	Q8TAC2	188 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	BRI3BP	Q8WY22	251 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	KLF6	Q99612	283 aa	Predicted RBP	13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	FAM167B	Q9BTA0	163 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	PCDH9	Q9HC56	1237 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	CYLD	Q9NQC7	956 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	CEP350	Q5VT06	3117 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	TCRBV5S1A1T	A0A578	114 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	CALB2	P22676	271 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	AMHR2	Q16671	573 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	SLC10A6	Q3KNW5	377 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	EFHC2	Q5JST6	749 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	ZNF484	Q5JVG2	852 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	PRAMEF19	Q5SWL8	479 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	NLRP9	Q7RTR0	991 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	MTDH	Q86UE4	582 aa	Known RBP	13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	UBA3	Q8TBC4	463 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	PYROXD1	Q8WU10	500 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	NKD2	Q969F2	451 aa	Predicted RBP	13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	C16orf70	Q9BSU1	422 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	SETD4	Q9NVD3	440 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	ZFP69B	Q9UJL9	534 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	DCTN4	Q9UJW0	460 aa		13.09	□□□□□ -0.31
RNF4-222	ENST00000541204	FARP1	Q9Y4F1	1045 aa	Predicted RBP	13.09	□□□□□ -0.31
RNF4-222	ENST00000541204		H0Y3Z8	333 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	SMPD1	P17405	629 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	PSMA2	P25787	234 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	RAD23B	P54727	409 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	PSMC1	P62191	440 aa	Known RBP	13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	GPR162	Q16538	588 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	LRRC38	Q5VT99	294 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	TRIM68	Q6AZZ1	485 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	MTHFD1L	Q6UB35	978 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	C3orf62	Q6ZUJ4	267 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	SHCBP1	Q8NEM2	672 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	PPTC7	Q8NI37	304 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	MICAL1	Q8TDZ2	1067 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	LENG1	Q96BZ8	264 aa	Predicted RBP	13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	SPDL1	Q96EA4	605 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	MS4A4A	Q96JQ5	239 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	HEXIM2	Q96MH2	286 aa	Known RBP	13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	CPXM1	Q96SM3	734 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	ALG13	Q9NP73	1137 aa	Known RBP	13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	PCSK1N	Q9UHG2	260 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	GLTPD2	A6NH11	291 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	ZWINT	O95229	277 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	LSM8	O95777	96 aa	Known RBP	13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	TPBGL	P0DKB5	382 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	ABL2	P42684	1182 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	SEPT7	Q16181	437 aa	Known RBP	13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	PPP1R2P3	Q6NXS1	205 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	RFWD2	Q8NHY2	731 aa		13.08	□□□□□ -0.32
RNF4-222	ENST00000541204	TTC8	Q8TAM2	541 aa		13.08	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms