RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 TJP2Q9UDY2 1190 aa11.14□□□□□ -0.63
VPS33A-204ENST00000540669 INTUQ9ULD6 942 aa11.14□□□□□ -0.63
VPS33A-204ENST00000540669 INSL5Q9Y5Q6 135 aa11.14□□□□□ -0.63
VPS33A-204ENST00000540669 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.14□□□□□ -0.63
VPS33A-204ENST00000540669 PRUNE2Q8WUY3 3088 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 DOCK6Q96HP0 2047 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 RCCD1A6NED2 376 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 BTNL10A8MVZ5 291 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 TRIM66O15016 1216 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 PAPSS1O43252 624 aaPredicted RBP11.13□□□□□ -0.63
VPS33A-204ENST00000540669 RTN2O75298 545 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 GLP2RO95838 553 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 ERBB2P04626 1255 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 ZDHHC11BP0C7U3 371 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 HMGA1P17096 107 aaKnown RBP11.13□□□□□ -0.63
VPS33A-204ENST00000540669 CYLC1P35663 651 aaPredicted RBP11.13□□□□□ -0.63
VPS33A-204ENST00000540669 EPHA5P54756 1037 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 HADHBP55084 474 aaKnown RBP11.13□□□□□ -0.63
VPS33A-204ENST00000540669 ADGRE1Q14246 886 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 TSR1Q2NL82 804 aaKnown RBP11.13□□□□□ -0.63
VPS33A-204ENST00000540669 C10orf76Q5T2E6 689 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 PM20D1Q6GTS8 502 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 PLEKHA7Q6IQ23 1121 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 ARCQ7LC44 396 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 VPS36Q86VN1 386 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 XYLT1Q86Y38 959 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 MCOLN2Q8IZK6 566 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 ACRBPQ8NEB7 543 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 KHSRPQ92945 711 aaKnown RBP eCLIP11.13□□□□□ -0.63
VPS33A-204ENST00000540669 MS4A3Q96HJ5 214 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 PIWIL1Q96J94 861 aaKnown RBP11.13□□□□□ -0.63
VPS33A-204ENST00000540669 CCDC42Q96M95 316 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 GUCD1Q96NT3 240 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 KCNK16Q96T55 309 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 CDCA3Q99618 268 aaPredicted RBP11.13□□□□□ -0.63
VPS33A-204ENST00000540669 EMILIN2Q9BXX0 1053 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 PACSIN1Q9BY11 444 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 LRRC3Q9BY71 257 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 ABI2Q9NYB9 513 aaPredicted RBP11.13□□□□□ -0.63
VPS33A-204ENST00000540669 HESX1Q9UBX0 185 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 PYCARDQ9ULZ3 195 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 HCFC2Q9Y5Z7 792 aa11.13□□□□□ -0.63
VPS33A-204ENST00000540669 NUP210Q8TEM1 1887 aaPredicted RBP11.12□□□□□ -0.63
VPS33A-204ENST00000540669 ANKRD62A6NC57 917 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 E5RJQ4 531 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 RFXAPO00287 272 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 AKR1B10O60218 316 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 TADA3O75528 432 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 GLUD1P00367 558 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 CYP1A2P05177 515 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 TMEM253P0C7T8 217 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 SRGAP2BP0DMP2 458 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 TNFAIP3P21580 790 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 SSTR3P32745 418 aaPredicted RBP11.12□□□□□ -0.63
VPS33A-204ENST00000540669 ARHGAP25P42331 645 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 GPR15P49685 360 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 PSEN1P49768 467 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 VAV2P52735 878 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 SLC5A3P53794 718 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 CYP27A1Q02318 531 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 DUSP4Q13115 394 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 AAK1Q2M2I8 961 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 CTC1Q2NKJ3 1217 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 BEND5Q7L4P6 421 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 SLC26A9Q7LBE3 791 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 BNIPLQ7Z465 357 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 TMC8Q8IU68 726 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 C3orf20Q8ND61 904 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 CMASQ8NFW8 434 aaPredicted RBP11.12□□□□□ -0.63
VPS33A-204ENST00000540669 UBA3Q8TBC4 463 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 ZNF707Q96C28 371 aaPredicted RBP11.12□□□□□ -0.63
VPS33A-204ENST00000540669 ARHGEF26Q96DR7 871 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 PPP1R13BQ96KQ4 1090 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 PGLYRP2Q96PD5 576 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 PLEKHA4Q9H4M7 779 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 COMMD8Q9NX08 183 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 MTCH2Q9Y6C9 303 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 DOCK8Q8NF50 2099 aa11.12□□□□□ -0.63
VPS33A-204ENST00000540669 A0A0A6YYK5 440 aaPredicted RBP11.11□□□□□ -0.63
VPS33A-204ENST00000540669 A0A0U1RQJ8 604 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 ZMYND10O75800 440 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 MYBL1P10243 752 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 EPCAMP16422 314 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 ACADSBP45954 432 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 NSFP46459 744 aaKnown RBP11.11□□□□□ -0.63
VPS33A-204ENST00000540669 TUFMP49411 452 aaKnown RBP11.11□□□□□ -0.63
VPS33A-204ENST00000540669 GALCP54803 685 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 MAP3K7CLP57077 242 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 DAOAP59103 153 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 USP46P62068 366 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 RPL10AP62906 217 aaKnown RBP11.11□□□□□ -0.63
VPS33A-204ENST00000540669 HYAL1Q12794 435 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 SNX30Q5VWJ9 437 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 TRNP1Q6NT89 227 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 MMS22LQ6ZRQ5 1243 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 DNAAF5Q86Y56 855 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 ZDHHC17Q8IUH5 632 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 ZNF276Q8N554 614 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 KREMEN2Q8NCW0 462 aa11.11□□□□□ -0.63
VPS33A-204ENST00000540669 ATRIPQ8WXE1 791 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms