RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 CHCHD4Q8N4Q1 142 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 TOP6BLQ8N6T0 577 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 IL17RCQ8NAC3 791 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 CXorf38Q8TB03 319 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 KBTBD7Q8WVZ9 684 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 KCNN1Q92952 543 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 CCDC127Q96BQ5 260 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 TRMT2BQ96GJ1 504 aaKnown RBP7.02□□□□□ -1.29
CD44-221ENST00000526000 PCED1BQ96HM7 432 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 FNBP1Q96RU3 617 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 MED10Q9BTT4 135 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 STRA6Q9BX79 667 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 NUSAP1Q9BXS6 441 aaKnown RBP7.02□□□□□ -1.29
CD44-221ENST00000526000 ZNF518BQ9C0D4 1074 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 DPEP3Q9H4B8 488 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 ST6GALNAC4Q9H4F1 302 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 ABCB6Q9NP58 842 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.02□□□□□ -1.295e-38■■■■■ 698.7
CD44-221ENST00000526000 ARHGEF4Q9NR80 690 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 INTS13Q9NVM9 706 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 GDAP2Q9NXN4 497 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 NXF1Q9UBU9 619 aaKnown RBP7.02□□□□□ -1.29
CD44-221ENST00000526000 KLK13Q9UKR3 277 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 CDH9Q9ULB4 789 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 MMP17Q9ULZ9 603 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 ARHGAP26Q9UNA1 814 aa7.02□□□□□ -1.29
CD44-221ENST00000526000 A0A087X0B3 334 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 ZNF233A6NK53 670 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 SRRM3A6NNA2 597 aaPredicted RBP7.01□□□□□ -1.29
CD44-221ENST00000526000 SLC26A4O43511 780 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 CEACAM1P13688 526 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 GAP43P17677 238 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 ENGP17813 658 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 PTPN1P18031 435 aaKnown RBP7.01□□□□□ -1.29
CD44-221ENST00000526000 TNNI1P19237 187 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 GARTP22102 1010 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 MAOBP27338 520 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 P2RY2P41231 377 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 CYP2J2P51589 502 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 ATXN3P54252 364 aaPredicted RBP7.01□□□□□ -1.29
CD44-221ENST00000526000 CDH8P55286 799 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 MRPS21P82921 87 aaKnown RBP7.01□□□□□ -1.29
CD44-221ENST00000526000 DUOXA2Q1HG44 320 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 ANO4Q32M45 955 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 FOXD4L5Q5VV16 416 aaPredicted RBP7.01□□□□□ -1.29
CD44-221ENST00000526000 TRAPPC11Q7Z392 1133 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 RASSF3Q86WH2 238 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 TMEM25Q86YD3 366 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 NELFCDQ8IXH7 590 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 LRRC52Q8N7C0 313 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 PNPLA1Q8N8W4 532 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 SCAMP5Q8TAC9 235 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 SPATA18Q8TC71 538 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 LEO1Q8WVC0 666 aaPredicted RBP7.01□□□□□ -1.29
CD44-221ENST00000526000 FOXD4L4Q8WXT5 416 aaPredicted RBP7.01□□□□□ -1.29
CD44-221ENST00000526000 CNOT6LQ96LI5 555 aaKnown RBP7.01□□□□□ -1.29
CD44-221ENST00000526000 CAMK1GQ96NX5 476 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 KCNK16Q96T55 309 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 ACOX2Q99424 681 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 B3GNT5Q9BYG0 378 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 ADAM33Q9BZ11 813 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 SLC6A17Q9H1V8 727 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 SLC32A1Q9H598 525 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 POLMQ9NP87 494 aaPredicted RBP7.01□□□□□ -1.29
CD44-221ENST00000526000 TMEM30AQ9NV96 361 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 TFIP11Q9UBB9 837 aaKnown RBP7.01□□□□□ -1.29
CD44-221ENST00000526000 FBXO2Q9UK22 296 aaPredicted RBP7.01□□□□□ -1.29
CD44-221ENST00000526000 ITGA11Q9UKX5 1188 aa7.01□□□□□ -1.29
CD44-221ENST00000526000 MYH11P35749 1972 aa7□□□□□ -1.29
CD44-221ENST00000526000 KMT2BQ9UMN6 2715 aaPredicted RBP7□□□□□ -1.29
CD44-221ENST00000526000 ANK1P16157 1881 aa7□□□□□ -1.29
CD44-221ENST00000526000 PDCD11Q14690 1871 aaKnown RBP7□□□□□ -1.29
CD44-221ENST00000526000 CACNA1EQ15878 2313 aa7□□□□□ -1.29
CD44-221ENST00000526000 SPAG17Q6Q759 2223 aa7□□□□□ -1.29
CD44-221ENST00000526000 SOBPA7XYQ1 873 aa7□□□□□ -1.29
CD44-221ENST00000526000 A8MXQ7 604 aa7□□□□□ -1.29
CD44-221ENST00000526000 WASH3PC4AMC7 463 aa7□□□□□ -1.29
CD44-221ENST00000526000 ADAM23O75077 832 aa7□□□□□ -1.29
CD44-221ENST00000526000 PHACTR2O75167 634 aa7□□□□□ -1.29
CD44-221ENST00000526000 TBX18O95935 607 aa7□□□□□ -1.29
CD44-221ENST00000526000 BMP15O95972 392 aa7□□□□□ -1.29
CD44-221ENST00000526000 ADH5P11766 374 aa7□□□□□ -1.29
CD44-221ENST00000526000 CSRP1P21291 193 aaKnown RBP7□□□□□ -1.29
CD44-221ENST00000526000 SCP2P22307 547 aa7□□□□□ -1.29
CD44-221ENST00000526000 WARSP23381 471 aaKnown RBP7□□□□□ -1.29
CD44-221ENST00000526000 YWHAQP27348 245 aa7□□□□□ -1.29
CD44-221ENST00000526000 CASP1P29466 404 aa7□□□□□ -1.29
CD44-221ENST00000526000 ABCD1P33897 745 aa7□□□□□ -1.29
CD44-221ENST00000526000 STAT6P42226 847 aa7□□□□□ -1.29
CD44-221ENST00000526000 GRIA2P42262 883 aa7□□□□□ -1.29
CD44-221ENST00000526000 MAGEA11P43364 429 aa7□□□□□ -1.29
CD44-221ENST00000526000 PGFP49763 221 aa7□□□□□ -1.29
CD44-221ENST00000526000 MYL6P60660 151 aa7□□□□□ -1.29
CD44-221ENST00000526000 SLC7A9P82251 487 aa7□□□□□ -1.29
CD44-221ENST00000526000 POU5F1Q01860 360 aaKnown RBP7□□□□□ -1.29
CD44-221ENST00000526000 RPL6Q02878 288 aaKnown RBP7□□□□□ -1.29
CD44-221ENST00000526000 RING1Q06587 406 aa7□□□□□ -1.29
CD44-221ENST00000526000 ORC1Q13415 861 aa7□□□□□ -1.29
CD44-221ENST00000526000 TRPC3Q13507 836 aa7□□□□□ -1.29
CD44-221ENST00000526000 MAP7D1Q3KQU3 841 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms