RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 STIP1P31948 543 aaKnown RBP10.6□□□□□ -0.71
MCF2-209ENST00000520602 TAF5Q15542 800 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 EFHC2Q5JST6 749 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 PPP1R26Q5T8A7 1209 aaPredicted RBP10.6□□□□□ -0.71
MCF2-209ENST00000520602 CDKL3Q8IVW4 592 aaPredicted RBP10.6□□□□□ -0.71
MCF2-209ENST00000520602 SHCBP1Q8NEM2 672 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 SLC2A14Q8TDB8 520 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 GOLGA2P5Q9HBQ8 144 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.6□□□□□ -0.71
MCF2-209ENST00000520602 CYB561D2O14569 222 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 CD48P09326 243 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 ASPAP45381 313 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 ITKQ08881 620 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 SV2CQ496J9 727 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 DUSP28Q4G0W2 176 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 CFAP157Q5JU67 520 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 C15orf39Q6ZRI6 1047 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 EXOC3L1Q86VI1 746 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 SLC7A14Q8TBB6 771 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 MRPL45Q9BRJ2 306 aaKnown RBP10.6□□□□□ -0.71
MCF2-209ENST00000520602 TUBGCP4Q9UGJ1 667 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 USP15Q9Y4E8 981 aaPredicted RBP10.6□□□□□ -0.71
MCF2-209ENST00000520602 KPNA7A9QM74 516 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 M0QYT0 321 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 EDNRBP24530 442 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 LRRC38Q5VT99 294 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 BZW1Q7L1Q6 419 aaKnown RBP10.59□□□□□ -0.71
MCF2-209ENST00000520602 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.59□□□□□ -0.71
MCF2-209ENST00000520602 ZNF410Q86VK4 478 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 ADGRF2Q8IZF7 708 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 ZDHHC14Q8IZN3 488 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 SLC4A11Q8NBS3 891 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 CD101Q93033 1021 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 CEP41Q9BYV8 373 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 PAK5Q9P286 719 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 CCDC78A2IDD5 438 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 CILPO75339 1184 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 ECHS1P30084 290 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 DEUP1Q05D60 604 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 PKN2Q16513 984 aaKnown RBP10.59□□□□□ -0.71
MCF2-209ENST00000520602 ARL13BQ3SXY8 428 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 ZC3H12AQ5D1E8 599 aaKnown RBP10.59□□□□□ -0.71
MCF2-209ENST00000520602 SCARA3Q6AZY7 606 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 NETO2Q8NC67 525 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 HASPINQ8TF76 798 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 SREK1Q8WXA9 508 aaKnown RBP10.59□□□□□ -0.71
MCF2-209ENST00000520602 MCUR1Q96AQ8 359 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 KATNAL1Q9BW62 490 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 EIF2AQ9BY44 585 aaKnown RBP10.59□□□□□ -0.71
MCF2-209ENST00000520602 NACA2Q9H009 215 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 HAUS2Q9NVX0 235 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.59□□□□□ -0.71
MCF2-209ENST00000520602 NENFQ9UMX5 172 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 CCDC195A0A1B0GUA6 201 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 CCT8L1PA6NM43 557 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 TSPAN1O60635 241 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 LGR5O75473 907 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 B3GAT3O94766 335 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 SRGAP2BP0DMP2 458 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 GEMIN4P57678 1058 aaKnown RBP10.59□□□□□ -0.71
MCF2-209ENST00000520602 ZNF200P98182 395 aaPredicted RBP10.59□□□□□ -0.71
MCF2-209ENST00000520602 OGDHQ02218 1023 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 MFSD14CQ5VZR4 134 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 CCDC62Q6P9F0 684 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 LVRNQ6Q4G3 990 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 ZCCHC9Q8N567 271 aaKnown RBP10.59□□□□□ -0.71
MCF2-209ENST00000520602 ALLCQ8N6M5 410 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 BRI3BPQ8WY22 251 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 ATXN7L3BQ96GX2 97 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 PIH1D1Q9NWS0 290 aaKnown RBP10.59□□□□□ -0.71
MCF2-209ENST00000520602 COL4A5P29400 1685 aa10.59□□□□□ -0.71
MCF2-209ENST00000520602 SRCAPQ6ZRS2 3230 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 SHOX2O60902 331 aaPredicted RBP10.58□□□□□ -0.72
MCF2-209ENST00000520602 MOCS2O96007 188 aaPredicted RBP10.58□□□□□ -0.72
MCF2-209ENST00000520602 MMP3P08254 477 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 CREB1P16220 341 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 RPL22P35268 128 aaKnown RBP10.58□□□□□ -0.72
MCF2-209ENST00000520602 PSEN2P49810 448 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 BCAT1P54687 386 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 PTK7Q13308 1070 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 TAF12Q16514 161 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 QPCTQ16769 361 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 SH3PXD2AQ5TCZ1 1133 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 ILDR2Q71H61 639 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 XYLT1Q86Y38 959 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 GPATCH11Q8N954 259 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 ADAM32Q8TC27 787 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 LPIN3Q9BQK8 851 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 AP4E1Q9UPM8 1137 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 KCNH4Q9UQ05 1017 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 C2CD2Q9Y426 696 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 IGKV6D-21A0A0A0MT36 114 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 CASTOR2A6NHX0 329 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 H3BRJ5 948 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 NCAM1P13591 858 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 ELK3P41970 407 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 ZNF143P52747 638 aaPredicted RBP10.58□□□□□ -0.72
MCF2-209ENST00000520602 MAP3K7CLP57077 242 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 TMPRSS15P98073 1019 aa10.58□□□□□ -0.72
MCF2-209ENST00000520602 SLC6A3Q01959 620 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms