RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 TIMM10P62072 90 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 HGFACQ04756 655 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 SLFN5Q08AF3 891 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 NCBP1Q09161 790 aaKnown RBP6.05□□□□□ -1.44
NUP54-218ENST00000515460 CCDC73Q6ZRK6 1079 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 CCDC129Q6ZRS4 1044 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 CLEC17AQ6ZS10 378 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 C16orf86Q6ZW13 317 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 OTUD6AQ7L8S5 288 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 SDCCAG8Q86SQ7 713 aaPredicted RBP6.05□□□□□ -1.44
NUP54-218ENST00000515460 KIAA2013Q8IYS2 634 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 MORC4Q8TE76 937 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 HDAC7Q8WUI4 952 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 HERVK_113Q902F9 699 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 CCDC34Q96HJ3 373 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 ORAI3Q9BRQ5 295 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 FSD1Q9BTV5 496 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 IDI2Q9BXS1 227 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 SIL1Q9H173 461 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 PIF1Q9H611 641 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 DDX4Q9NQI0 724 aaKnown RBP6.05□□□□□ -1.44
NUP54-218ENST00000515460 HOMER3Q9NSC5 361 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 KCMF1Q9P0J7 381 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 HECAQ9UBI9 543 aaPredicted RBP6.05□□□□□ -1.44
NUP54-218ENST00000515460 DENND2AQ9ULE3 1009 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 PA2G4Q9UQ80 394 aaKnown RBP6.05□□□□□ -1.44
NUP54-218ENST00000515460 GIT1Q9Y2X7 761 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 REXO2Q9Y3B8 237 aaKnown RBP6.05□□□□□ -1.44
NUP54-218ENST00000515460 AFG3L2Q9Y4W6 797 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 ZHX2Q9Y6X8 837 aa6.05□□□□□ -1.44
NUP54-218ENST00000515460 RPAP1Q9BWH6 1393 aaPredicted RBP6.05□□□□□ -1.44
NUP54-218ENST00000515460 SALL1Q9NSC2 1324 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 DDTLA6NHG4 134 aaPredicted RBP6.04□□□□□ -1.44
NUP54-218ENST00000515460 ATP8B1O43520 1251 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 HMMRO75330 724 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 ERLIN1O75477 346 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 RPS6KA5O75582 802 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 NEBLO76041 1014 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 IL9P15248 144 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 ADORA1P30542 326 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 ELF1P32519 619 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 NEK4P51957 841 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 GYS2P54840 703 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 DPTQ07507 201 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 CCDC178Q5BJE1 867 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 FNDC7Q5VTL7 733 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 NAIF1Q69YI7 327 aaPredicted RBP6.04□□□□□ -1.44
NUP54-218ENST00000515460 TIGD7Q6NT04 549 aaPredicted RBP6.04□□□□□ -1.44
NUP54-218ENST00000515460 GBP6Q6ZN66 633 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 KIAA1328Q86T90 577 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 KIF18BQ86Y91 864 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 PHYKPLQ8IUZ5 450 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 PASD1Q8IV76 773 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 TRMT2AQ8IZ69 625 aaKnown RBP6.04□□□□□ -1.44
NUP54-218ENST00000515460 SCYL3Q8IZE3 742 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 C7orf31Q8N865 590 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 EXOC6Q8TAG9 804 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 ZNF384Q8TF68 577 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 GCDHQ92947 438 aaPredicted RBP6.04□□□□□ -1.44
NUP54-218ENST00000515460 SNX21Q969T3 373 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 SLC7A6OSQ96CW6 309 aaPredicted RBP6.04□□□□□ -1.44
NUP54-218ENST00000515460 C16orf92Q96LL3 132 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 OGDHLQ9ULD0 1010 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 COG5Q9UP83 839 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 CTDP1Q9Y5B0 961 aaPredicted RBP6.04□□□□□ -1.44
NUP54-218ENST00000515460 SPO11Q9Y5K1 396 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 SPEF2Q9C093 1822 aa6.04□□□□□ -1.44
NUP54-218ENST00000515460 LOC400499M0QZD8 3231 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 A0A1B0GUA9 196 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 ENTPD3O75355 529 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 CIAO1O76071 339 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 PECAM1P16284 738 aaPredicted RBP6.03□□□□□ -1.44
NUP54-218ENST00000515460 IL15P40933 162 aaPredicted RBP6.03□□□□□ -1.44
NUP54-218ENST00000515460 VCPP55072 806 aaKnown RBP6.03□□□□□ -1.44
NUP54-218ENST00000515460 ATP2C1P98194 919 aaPredicted RBP6.03□□□□□ -1.44
NUP54-218ENST00000515460 DEUP1Q05D60 604 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 RIN1Q13671 783 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 RRP1BQ14684 758 aaKnown RBP6.03□□□□□ -1.44
NUP54-218ENST00000515460 TBC1D25Q3MII6 688 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 ALDH1L2Q3SY69 923 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 MFSD4BQ5TF39 518 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 HHATQ5VTY9 493 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 TTC19Q6DKK2 380 aaPredicted RBP6.03□□□□□ -1.44
NUP54-218ENST00000515460 FASTKD5Q7L8L6 764 aaKnown RBP6.03□□□□□ -1.44
NUP54-218ENST00000515460 BMP8AQ7Z5Y6 402 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 ADGRE4PQ86SQ3 457 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 BCL6BQ8N143 479 aaPredicted RBP6.03□□□□□ -1.44
NUP54-218ENST00000515460 GPT2Q8TD30 523 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 ZNF483Q8TF39 744 aaPredicted RBP6.03□□□□□ -1.44
NUP54-218ENST00000515460 RABGGTAQ92696 567 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 NINJ1Q92982 152 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 PRRX2Q99811 253 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 SLC6A15Q9H2J7 730 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 RWDD1Q9H446 243 aaPredicted RBP6.03□□□□□ -1.44
NUP54-218ENST00000515460 SLC2A4RGQ9NR83 387 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 POLR3BQ9NW08 1133 aaPredicted RBP6.03□□□□□ -1.44
NUP54-218ENST00000515460 FANCLQ9NW38 375 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.03□□□□□ -1.44
NUP54-218ENST00000515460 USP25Q9UHP3 1055 aa6.03□□□□□ -1.44
NUP54-218ENST00000515460 NOB1Q9ULX3 412 aaKnown RBP6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms