RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 CD163L1Q9NR16 1453 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 COL4A3Q01955 1670 aa4.61□□□□□ -1.67
NUP54-212ENST00000513248 CRYBG1Q9Y4K1 1723 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 TBX3O15119 743 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 ERN1O75460 977 aaKnown RBP4.6□□□□□ -1.67
NUP54-212ENST00000513248 THP07101 528 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 GNAI3P08754 354 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 HKR1P10072 659 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 EGR2P11161 476 aaPredicted RBP4.6□□□□□ -1.67
NUP54-212ENST00000513248 SLC5A1P13866 664 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 KCNA2P16389 499 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 AVPR1BP47901 424 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 TBX4P57082 545 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 GNAI1P63096 354 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 FAM193AP78312 1265 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 BLOC1S1P78537 153 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 BOP1Q14137 746 aaKnown RBP4.6□□□□□ -1.67
NUP54-212ENST00000513248 HSP90AB2PQ58FF8 381 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 KHDC1LQ5JSQ8 128 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 SP5Q6BEB4 398 aaPredicted RBP4.6□□□□□ -1.67
NUP54-212ENST00000513248 USP37Q86T82 979 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 MORC1Q86VD1 984 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 SLC17A8Q8NDX2 589 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 TNPO1Q92973 898 aaKnown RBP4.6□□□□□ -1.67
NUP54-212ENST00000513248 APIPQ96GX9 242 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 IMPG2Q9BZV3 1241 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 PANK3Q9H999 370 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 SARS2Q9NP81 518 aaKnown RBP4.6□□□□□ -1.67
NUP54-212ENST00000513248 PIH1D1Q9NWS0 290 aaKnown RBP4.6□□□□□ -1.67
NUP54-212ENST00000513248 SYBUQ9NX95 663 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.6□□□□□ -1.67
NUP54-212ENST00000513248 STAP2Q9UGK3 403 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 PARD3Q8TEW0 1356 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 THSD7AQ9UPZ6 1657 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 AKAP12Q02952 1782 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 BRWD3Q6RI45 1802 aa4.6□□□□□ -1.67
NUP54-212ENST00000513248 A0A087WWL8 130 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 PRAMEF33A0A0G2JMD5 474 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 CCDC195A0A1B0GUA6 201 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 ZNF785A8K8V0 405 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 ISM1B1AKI9 464 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 GOLIM4O00461 696 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 PRAMEF10O60809 474 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 NFAT5O94916 1531 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 NUDT3O95989 172 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 ITGAMP11215 1152 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 PIM1P11309 404 aaPredicted RBP4.59□□□□□ -1.67
NUP54-212ENST00000513248 MYF5P13349 255 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 PHKA1P46020 1223 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 ANXA11P50995 505 aaKnown RBP4.59□□□□□ -1.67
NUP54-212ENST00000513248 VAV2P52735 878 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 ZNF135P52742 658 aaPredicted RBP4.59□□□□□ -1.67
NUP54-212ENST00000513248 CACNB3P54284 484 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 PSMC1P62191 440 aaKnown RBP4.59□□□□□ -1.67
NUP54-212ENST00000513248 TXNRD1Q16881 649 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 RNF220Q5VTB9 566 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 GPR149Q86SP6 731 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 FAM109AQ8N4B1 249 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 AOPEPQ8N6M6 819 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 LMO7Q8WWI1 1683 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 LINC00476Q8WZB0 136 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 TTC17Q96AE7 1141 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 COQ10AQ96MF6 247 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 P2RX7Q99572 595 aaKnown RBP4.59□□□□□ -1.67
NUP54-212ENST00000513248 SPATA5L1Q9BVQ7 753 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 TOR3AQ9H497 397 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 UNKLQ9H9P5 680 aaKnown RBP4.59□□□□□ -1.67
NUP54-212ENST00000513248 ARNT2Q9HBZ2 717 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 TESQ9UGI8 421 aaKnown RBP4.59□□□□□ -1.67
NUP54-212ENST00000513248 CDYLQ9Y232 598 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 NEU2Q9Y3R4 380 aa4.59□□□□□ -1.67
NUP54-212ENST00000513248 RGPD1P0DJD0 1748 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 MON2Q7Z3U7 1717 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 TNS2Q63HR2 1409 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 RTL1A6NKG5 1358 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 FLT4P35916 1363 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 MRPS21P82921 87 aaKnown RBP4.58□□□□□ -1.68
NUP54-212ENST00000513248 MC2RQ01718 297 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 DYRK1AQ13627 763 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 POLD3Q15054 466 aaPredicted RBP4.58□□□□□ -1.68
NUP54-212ENST00000513248 GEN1Q17RS7 908 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 FAM160B1Q5W0V3 765 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 TAPT1Q6NXT6 567 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 DARS2Q6PI48 645 aaKnown RBP4.58□□□□□ -1.68
NUP54-212ENST00000513248 MICU3Q86XE3 530 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 LRTOMTQ8WZ04 291 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 CAVIN3Q969G5 261 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 NMD3Q96D46 503 aaKnown RBP4.58□□□□□ -1.68
NUP54-212ENST00000513248 SLC39A13Q96H72 371 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 MSLNLQ96KJ4 702 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 CNPPD1Q9BV87 410 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 BTBD1Q9H0C5 482 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 ALG13Q9NP73 1137 aaKnown RBP4.58□□□□□ -1.68
NUP54-212ENST00000513248 PTGFRNQ9P2B2 879 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 CPA4Q9UI42 421 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 PLEKHM1Q9Y4G2 1056 aa4.58□□□□□ -1.68
NUP54-212ENST00000513248 ABCC6O95255 1503 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 DISP2A7MBM2 1401 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 INSRP06213 1382 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 PCDH11XQ9BZA7 1347 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms