RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 SLC25A41Q8N5S1 370 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 C12orf50Q8NA57 414 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 NOD1Q9Y239 953 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 CCDC78A2IDD5 438 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 ALOX15BO15296 676 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 PTPN11Q06124 597 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 SPIRE1Q08AE8 756 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 CYTH1Q15438 398 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 UGCGQ16739 394 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 PARP6Q2NL67 630 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 EFCAB12Q6NXP0 572 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 OTOAQ7RTW8 1153 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 CPNE8Q86YQ8 564 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 SDCCAG3Q96C92 435 aa8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 NOCTQ9UK39 431 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-216ENST00000512820 VDRP11473 427 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 RPL10AP62906 217 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 DPYSL3Q14195 570 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 KBTBD12Q3ZCT8 623 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 IRGCQ6NXR0 463 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 C16orf89Q6UX73 402 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 DENND5BQ6ZUT9 1274 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 PHF13Q86YI8 300 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 MICALL2Q8IY33 904 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 TTC8Q8TAM2 541 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 TMA16Q96EY4 203 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 MFSD14AQ96MC6 490 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 ZNF317Q96PQ6 595 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 HAUS8Q9BT25 410 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 NACA2Q9H009 215 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 VPS33BQ9H267 617 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 SMARCAD1Q9H4L7 1026 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 TASP1Q9H6P5 420 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 PRMT7Q9NVM4 692 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 SCN11AQ9UI33 1791 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 hCG_2014768A0A024R1R8 64 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 DGKIO75912 1065 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 PSMG1O95456 288 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 EIF4BP23588 611 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 RPL22P35268 128 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 HOXD13P35453 343 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 BAG6P46379 1132 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 FKBP1AP62942 108 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 ZACNQ401N2 412 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 MPZL3Q6UWV2 235 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 RNF135Q8IUD6 432 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 FAM172AQ8WUF8 416 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 LENG9Q96B70 501 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 FSD1LQ9BXM9 530 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 DEFB129Q9H1M3 183 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 LRRC4CQ9HCJ2 640 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 ARHGAP26Q9UNA1 814 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 SLC12A4Q9UP95 1085 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 FKBP6O75344 327 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 MTA2O94776 668 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 GLRA2P23416 452 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 KDELR1P24390 212 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 EEF1B2P24534 225 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 MIPP30301 263 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 ZNF268Q14587 947 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 USP10Q14694 798 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 TAF12Q16514 161 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 CYP1B1Q16678 543 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 EFHC1Q5JVL4 640 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 DSTYKQ6XUX3 929 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 GALNT4Q8N4A0 578 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 AGBL3Q8NEM8 1001 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 ZNF398Q8TD17 642 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 SPOCK2Q92563 424 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 ZNF669Q96BR6 464 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 GLIS2Q9BZE0 524 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 LRMDAQ9H2I8 198 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 SLC5A4Q9NY91 659 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 DCDC2Q9UHG0 476 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 ZC3H4Q9UPT8 1303 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 APOC4-APOC2K7ER74 178 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 C2CD2LO14523 706 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 APOC2P02655 101 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 MCF2P10911 925 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 ATP4AP20648 1035 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 SPDYE2Q495Y8 402 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 BRSK2Q8IWQ3 736 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 FAM13CQ8NE31 585 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 TFB1MQ8WVM0 346 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 TMEM176AQ96HP8 235 aa8.73□□□□□ -1.01
LIMCH1-216ENST00000512820 ASTN2O75129 1339 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 CRYBG1Q9Y4K1 1723 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 hCG_1818297A0A087WSY0 165 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 RNF103-CHMP3A0A140T963 221 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 FAM237BA0A1B0GVD1 139 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 SDR42E2A6NKP2 422 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 ITGAVP06756 1048 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 RFC1P35251 1148 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 IREB2P48200 963 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 CCDC15Q0P6D6 951 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 PDK1Q15118 436 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 TEDDM1Q5T9Z0 273 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 APOBEC3FQ8IUX4 373 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 TRIM15Q9C019 465 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 DTNAQ9Y4J8 743 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms