RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 EME2A4GXA9 379 aaPredicted RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 PLSCR1O15162 318 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 TBX10O75333 385 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 PIGRP01833 764 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 CCDC62Q6P9F0 684 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 UBA3Q8TBC4 463 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 ALKBH8Q96BT7 664 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 DHRS4Q9BTZ2 278 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 DLGAP2Q9P1A6 1054 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 B2RBV5 119 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 COPEO14579 308 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 CSDE1O75534 798 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 TOM1L1O75674 476 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 DLDP09622 509 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 MXRA7P84157 204 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 CDK16Q00536 496 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 THOC5Q13769 683 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 PRKG1Q13976 671 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 THEMIS2Q5TEJ8 643 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 SCYL2Q6P3W7 929 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 WDR49Q8IV35 697 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 ARID3BQ8IVW6 561 aaPredicted RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 RTKN2Q8IZC4 609 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 FBXO27Q8NI29 283 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 TWNKQ96RR1 684 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 GPATCH2LQ9NWQ4 482 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 PPARGC1AQ9UBK2 798 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 LNPEPQ9UIQ6 1025 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 MAFBQ9Y5Q3 323 aaPredicted RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 CXorf49A8MYA2 514 aaPredicted RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 E7ESA3 106 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 MAP3K13O43283 966 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 UGT1A9O60656 530 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 ERBB2P04626 1255 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 ENO1P06733 434 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 TAP1Q03518 808 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 KLC1Q07866 573 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 SMAD1Q15797 465 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 C15orf59Q2T9L4 293 aaPredicted RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 CDCA2Q69YH5 1023 aaPredicted RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 POLNQ7Z5Q5 900 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 TRIM50Q86XT4 487 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 NRG4Q8WWG1 115 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 ZNF518BQ9C0D4 1074 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 TLE6Q9H808 572 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 UGT1A7Q9HAW7 530 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 UGT1A10Q9HAW8 530 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 UGT1A8Q9HAW9 530 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 HMGXB4Q9UGU5 601 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 PGM1P36871 562 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 ETV4P43268 484 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 YWHAEP62258 255 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 KDSRQ06136 332 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 STXBP2Q15833 593 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 TMEM192Q8IY95 271 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 AGBL3Q8NEM8 1001 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 ZNF398Q8TD17 642 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 SCG3Q8WXD2 468 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 STMN2Q93045 179 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 PTCD3Q96EY7 689 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 FAM161BQ96MY7 647 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 SRPK1Q96SB4 655 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 SSU72Q9NP77 194 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 STRIP2Q9ULQ0 834 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 USP18Q9UMW8 372 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 MTO1Q9Y2Z2 717 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 WASF2Q9Y6W5 498 aa9.66□□□□□ -0.86
LIMCH1-215ENST00000512632 LOXHD1Q8IVV2 1947 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 H3BRJ5 948 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 INO80B-WBP1J3KQ70 363 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 OGTO15294 1046 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 MSCO60682 206 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 PTPN7P35236 360 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 STAT5BP51692 787 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 TMPRSS15P98073 1019 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 GRIK3Q13003 919 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 NBPF20Q3BBV1 942 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 FAM102AQ5T9C2 384 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 NIPA2Q8N8Q9 360 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 SLC44A1Q8WWI5 657 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 CLPTM1LQ96KA5 538 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 NLRP4Q96MN2 994 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 WRNIP1Q96S55 665 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 TEX13BQ9BXU2 312 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 MRPL4Q9BYD3 311 aaKnown RBP9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 INO80BQ9C086 356 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 XYLT2Q9H1B5 865 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 ASCC2Q9H1I8 757 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 ACAD9Q9H845 621 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 B4GALT5O43286 388 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 ATG7O95352 703 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 RFC5P40937 340 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 ROR1Q01973 937 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 PRKD1Q15139 912 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 EEF1DP3Q658K8 133 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 REPS2Q8NFH8 660 aa9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 SPDYE1Q8NFV5 336 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-215ENST00000512632 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms