RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 RIN3Q8TB24 985 aa22.39■■□□□ 1.17
SQSTM1-210ENST00000506042 GOLGA5Q8TBA6 731 aa22.39■■□□□ 1.17
SQSTM1-210ENST00000506042 CGRRF1Q99675 332 aa22.39■■□□□ 1.17
SQSTM1-210ENST00000506042 CRTAC1Q9NQ79 661 aa22.39■■□□□ 1.17
SQSTM1-210ENST00000506042 SH3BP1Q9Y3L3 701 aa22.39■■□□□ 1.17
SQSTM1-210ENST00000506042 ANAPC1Q9H1A4 1944 aa22.39■■□□□ 1.17
SQSTM1-210ENST00000506042 E2F8A0AVK6 867 aa22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 ZNF840PA6NDX5 716 aa22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 PTPN1P18031 435 aaKnown RBP22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 LMO2P25791 158 aa22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 YWHAQP27348 245 aa22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 RDXP35241 583 aaKnown RBP22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 GRIA2P42262 883 aa22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 TNFRSF4P43489 277 aa22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 GAD2Q05329 585 aa22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 PSMD6Q15008 389 aa22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 SPDYCQ5MJ68 293 aa22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 PSAPL1Q6NUJ1 521 aa22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 RABEPKQ7Z6M1 372 aa22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 RASSF3Q86WH2 238 aa22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 ZSWIM2Q8NEG5 633 aa22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 KCNV2Q8TDN2 545 aa22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 TPSD1Q9BZJ3 242 aa22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 TRIM9Q9C026 710 aa22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 LINC00597Q9H2U6 94 aa22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 SLC32A1Q9H598 525 aa22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 EML5Q05BV3 1969 aa22.38■■□□□ 1.17
SQSTM1-210ENST00000506042 ATG2BQ96BY7 2078 aa22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 KIAA1549LQ6ZVL6 1849 aa22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 SPTLC2O15270 562 aa22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 PPP6R2O75170 966 aa22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 STAU1O95793 577 aaKnown RBP22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 CYP17A1P05093 508 aa22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 ADH5P11766 374 aa22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 IFRD2Q12894 506 aaPredicted RBP22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 TAF10Q12962 218 aa22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 DHCR24Q15392 516 aa22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 PGBD3Q8N328 593 aa22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 RDH13Q8NBN7 331 aa22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 FBXO32Q969P5 355 aa22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 CCDC127Q96BQ5 260 aa22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 USP28Q96RU2 1077 aa22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 MED10Q9BTT4 135 aa22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 ARHGEF4Q9NR80 690 aa22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 KBTBD4Q9NVX7 518 aa22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 COMMD8Q9NX08 183 aa22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 CFAP97Q9P2B7 532 aa22.37■■□□□ 1.17
SQSTM1-210ENST00000506042 C4orf47A7E2U8 309 aa22.36■■□□□ 1.17
SQSTM1-210ENST00000506042 STX6O43752 255 aa22.36■■□□□ 1.17
SQSTM1-210ENST00000506042 KAT7O95251 611 aa22.36■■□□□ 1.17
SQSTM1-210ENST00000506042 CEACAM1P13688 526 aa22.36■■□□□ 1.17
SQSTM1-210ENST00000506042 OPRD1P41143 372 aa22.36■■□□□ 1.17
SQSTM1-210ENST00000506042 NASPP49321 788 aaPredicted RBP22.36■■□□□ 1.17
SQSTM1-210ENST00000506042 CYP2J2P51589 502 aa22.36■■□□□ 1.17
SQSTM1-210ENST00000506042 HECTD3Q5T447 861 aa22.36■■□□□ 1.17
SQSTM1-210ENST00000506042 SDE2Q6IQ49 451 aa22.36■■□□□ 1.17
SQSTM1-210ENST00000506042 ADGRG2Q8IZP9 1017 aa22.36■■□□□ 1.17
SQSTM1-210ENST00000506042 CCDC33Q8N5R6 958 aa22.36■■□□□ 1.17
SQSTM1-210ENST00000506042 B3GALNT2Q8NCR0 500 aa22.36■■□□□ 1.17
SQSTM1-210ENST00000506042 ZNF507Q8TCN5 953 aa22.36■■□□□ 1.17
SQSTM1-210ENST00000506042 SMOC1Q9H4F8 434 aa22.36■■□□□ 1.17
SQSTM1-210ENST00000506042 AGPAT3Q9NRZ7 376 aa22.36■■□□□ 1.17
SQSTM1-210ENST00000506042 SMPD4Q9NXE4 827 aa22.36■■□□□ 1.17
SQSTM1-210ENST00000506042 K7EQS6 105 aa22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 DCLK1O15075 740 aa22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 CUTAO60888 179 aa22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 OLFM2O95897 454 aa22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 OAS1P00973 400 aaKnown RBP22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 CSRP1P21291 193 aaKnown RBP22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 HOXD12P35452 270 aa22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 TUBP50607 506 aa22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 ATXN3P54252 364 aaPredicted RBP22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 CYP24A1Q07973 514 aa22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 BIRC3Q13489 604 aa22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 CNNM4Q6P4Q7 775 aa22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 PIGKQ92643 395 aa22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 DHX58Q96C10 678 aa22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 DMAP1Q9NPF5 467 aaPredicted RBP22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 RXFP3Q9NSD7 469 aa22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 FAM13BQ9NYF5 915 aa22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 NXF1Q9UBU9 619 aaKnown RBP22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 EVLQ9UI08 416 aaPredicted RBP22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 ACACBO00763 2458 aa22.35■■□□□ 1.17
SQSTM1-210ENST00000506042 MYO16Q9Y6X6 1858 aa22.34■■□□□ 1.17
SQSTM1-210ENST00000506042 LNP1A1A4G5 178 aa22.34■■□□□ 1.17
SQSTM1-210ENST00000506042 TNFRSF10BO14763 440 aa22.34■■□□□ 1.17
SQSTM1-210ENST00000506042 AP5Z1O43299 807 aa22.34■■□□□ 1.17
SQSTM1-210ENST00000506042 HCRTO43612 131 aa22.34■■□□□ 1.17
SQSTM1-210ENST00000506042 EXOC3O60645 756 aa22.34■■□□□ 1.17
SQSTM1-210ENST00000506042 KLF8O95600 359 aaPredicted RBP22.34■■□□□ 1.17
SQSTM1-210ENST00000506042 YEATS4O95619 227 aa22.34■■□□□ 1.17
SQSTM1-210ENST00000506042 ZNF252P-AS1Q0IIN9 211 aa22.34■■□□□ 1.17
SQSTM1-210ENST00000506042 ZNF667Q5HYK9 610 aa22.34■■□□□ 1.17
SQSTM1-210ENST00000506042 TCEAL6Q6IPX3 200 aa22.34■■□□□ 1.17
SQSTM1-210ENST00000506042 FAM173BQ6P4H8 233 aa22.34■■□□□ 1.17
SQSTM1-210ENST00000506042 SLC36A4Q6YBV0 504 aa22.34■■□□□ 1.17
SQSTM1-210ENST00000506042 TXNDC5Q8NBS9 432 aaKnown RBP22.34■■□□□ 1.17
SQSTM1-210ENST00000506042 MDGA1Q8NFP4 955 aa22.34■■□□□ 1.17
SQSTM1-210ENST00000506042 TCEAL3Q969E4 200 aa22.34■■□□□ 1.17
SQSTM1-210ENST00000506042 SMARCD1Q96GM5 515 aa22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms