RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, human

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPRF-215	ENST00000496447	RIC8B	Q9NVN3	520 aa		13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	SNTG2	Q9NY99	539 aa		13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	DBR1	Q9UK59	544 aa	Known RBP	13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	SALL1	Q9NSC2	1324 aa		13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	USP32	Q8NFA0	1604 aa		13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	LRRIQ3	A6PVS8	624 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	CSDE1	O75534	798 aa	Known RBP	13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	SOAT2	O75908	522 aa		13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	SRP72	O76094	671 aa	Known RBP	13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	ENDOD1	O94919	500 aa		13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	KCNJ1	P48048	391 aa		13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	FBXO47	Q5MNV8	452 aa		13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	DAB2IP	Q5VWQ8	1189 aa		13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	MRNIP	Q6NTE8	343 aa		13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	RFX8	Q6ZV50	586 aa		13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	PRUNE1	Q86TP1	453 aa		13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	RIN2	Q8WYP3	895 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	HMX1	Q9NP08	348 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	C6orf203	Q9P0P8	240 aa	Predicted RBP	13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	AAR2	Q9Y312	384 aa	Known RBP	13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	CXCL8	P10145	99 aa		13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	TC2N	Q8N9U0	490 aa		13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	FAM172A	Q8WUF8	416 aa		13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	ABHD16B	Q9H3Z7	469 aa		13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	SMARCAL1	Q9NZC9	954 aa		13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	DLGAP2	Q9P1A6	1054 aa		13.62	□□□□□ -0.23
PTPRF-215	ENST00000496447	KRT75	O95678	551 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	VCL	P18206	1134 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	RAP1GDS1	P52306	607 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	CYP24A1	Q07973	514 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	RAD9B	Q6WBX8	426 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	TRPM8	Q7Z2W7	1104 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	EFL1	Q7Z2Z2	1120 aa	Known RBP	13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	ANKS1A	Q92625	1134 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	CDCA5	Q96FF9	252 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	POP1	Q99575	1024 aa	Known RBP	13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	FRMD8	Q9BZ67	464 aa	Predicted RBP	13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	ZC3H13	Q5T200	1668 aa	Known RBP	13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	AMH	P03971	560 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	ACADS	P16219	412 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	WEE1	P30291	646 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	STIP1	P31948	543 aa	Known RBP	13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	OAZ1	P54368	228 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	RHOA	P61586	193 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	PDK2	Q15119	407 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	ZNF284	Q2VY69	593 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	RARS2	Q5T160	578 aa	Known RBP	13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	TMC2	Q8TDI7	906 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	UBXN6	Q9BZV1	441 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	RANBP17	Q9H2T7	1088 aa	Known RBP	13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	NPHS2	Q9NP85	383 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	GRID1	Q9ULK0	1009 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	USP15	Q9Y4E8	981 aa	Predicted RBP	13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	RAD51C	O43502	376 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	KRT16	P08779	473 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	GHR	P10912	638 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	TGM2	P21980	687 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	PTPN7	P35236	360 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	ALDH5A1	P51649	535 aa	Predicted RBP	13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	PPAT	Q06203	517 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	EIF2B5	Q13144	721 aa	Known RBP	13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	FAXC	Q5TGI0	409 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	VPS37A	Q8NEZ2	397 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	PRPF18	Q99633	342 aa	Known RBP	13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	ZCWPW1	Q9H0M4	648 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	RIOX1	Q9H6W3	641 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	RHBDL2	Q9NX52	303 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	PLA2G4C	Q9UP65	541 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	POLR1A	O95602	1720 aa	Predicted RBP	13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	ACADM	P11310	421 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	KLRC2	P26717	231 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	COIL	P38432	576 aa	Predicted RBP	13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	MYL6	P60660	151 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	MFSD4B	Q5TF39	518 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	SLC30A10	Q6XR72	485 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	C3orf67	Q6ZVT6	689 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	ARHGAP22	Q7Z5H3	698 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	WDR48	Q8TAF3	677 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	TMEM176A	Q96HP8	235 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	CYP3A43	Q9HB55	503 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	DDX43	Q9NXZ2	648 aa	Known RBP	13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	ITGA11	Q9UKX5	1188 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	MAGEA13P	A6NCF6	341 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447		E7ENQ6	273 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	PGM1	P36871	562 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	KPNA1	P52294	538 aa	Predicted RBP	13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	OVOS1	Q6IE37	1185 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	LONP2	Q86WA8	852 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	STX19	Q8N4C7	294 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	KLF6	Q99612	283 aa	Predicted RBP	13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	TLR8	Q9NR97	1041 aa	Known RBP	13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	NDUFA13	Q9P0J0	144 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	SPAST	Q9UBP0	616 aa		13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	INO80	Q9ULG1	1556 aa	Predicted RBP	13.61	□□□□□ -0.23
PTPRF-215	ENST00000496447	CNTNAP2	Q9UHC6	1331 aa		13.6	□□□□□ -0.23
PTPRF-215	ENST00000496447	FKBP9	O95302	570 aa		13.6	□□□□□ -0.23
PTPRF-215	ENST00000496447	TAL1	P17542	331 aa	Predicted RBP	13.6	□□□□□ -0.23
PTPRF-215	ENST00000496447	SOX10	P56693	466 aa		13.6	□□□□□ -0.23
PTPRF-215	ENST00000496447	PLD1	Q13393	1074 aa		13.6	□□□□□ -0.23
PTPRF-215	ENST00000496447	KYNU	Q16719	465 aa		13.6	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms