RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 LSM8O95777 96 aaKnown RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 SNRPAP09012 282 aaKnown RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 SPATA31D3P0C874 917 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 ETS2P15036 469 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 DESP17661 470 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 TBXAS1P24557 533 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 HOXA10P31260 410 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 ABCD1P33897 745 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 USP46P62068 366 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 PSMC5P62195 406 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 HPCAP84074 193 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 ARHGAP8P85298 464 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 PDE1BQ01064 536 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 GAD2Q05329 585 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 SFSWAPQ12872 951 aaKnown RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 DMP1Q13316 513 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 CUL2Q13617 745 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 TTLL12Q14166 644 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 SHROOM1Q2M3G4 852 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 BBS9Q3SYG4 887 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 KBTBD12Q3ZCT8 623 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 MMEL1Q495T6 779 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 HSP90AA5PQ58FG0 334 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 ZFYVE27Q5T4F4 411 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 PRR5LQ6MZQ0 368 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 SLC39A4Q6P5W5 647 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 BORAQ6PGQ7 559 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 SPATA31D4Q6ZUB0 917 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 SATL1Q86VE3 508 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 TMEM126BQ8IUX1 230 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 LRRC43Q8N309 656 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 ACTRT2Q8TDY3 377 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 GDPD5Q8WTR4 605 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 GFM2Q969S9 779 aaKnown RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 MPP4Q96JB8 637 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 ACAP3Q96P50 834 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 CATSPER2Q96P56 530 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 FAM96AQ9H5X1 160 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 ANKEF1Q9NU02 776 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 ETNK2Q9NVF9 386 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 HSFX1Q9UBD0 423 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 PPP1R1BQ9UD71 204 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 XPO7Q9UIA9 1087 aaKnown RBP10.09□□□□□ -0.79
SYNE1-230ENST00000495090 TEX264Q9Y6I9 313 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 RPS6KL1Q9Y6S9 549 aa10.09□□□□□ -0.79
SYNE1-230ENST00000495090 ADAMTSL1Q8N6G6 1762 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 C15orf38-AP3S2A0A0A6YYH1 394 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 FAM189A1O60320 539 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 PLA2G6O60733 806 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 C1QAP02745 245 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 MYL4P12829 197 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 CPA3P15088 417 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 TCF4P15884 667 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 NPTX2P47972 431 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 RBM5P52756 815 aaKnown RBP eCLIP10.08□□□□□ -0.8
SYNE1-230ENST00000495090 AQP5P55064 265 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 AQP4P55087 323 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 INHBCP55103 352 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 GDF10P55107 478 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 RPL7AP62424 266 aaKnown RBP10.08□□□□□ -0.8
SYNE1-230ENST00000495090 OTUD4Q01804 1114 aaKnown RBP10.08□□□□□ -0.8
SYNE1-230ENST00000495090 CREB5Q02930 508 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 CCNIQ14094 377 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 PSMD6Q15008 389 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.08□□□□□ -0.8
SYNE1-230ENST00000495090 OGFRL1Q5TC84 451 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-230ENST00000495090 RNF111Q6ZNA4 994 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 ARPINQ7Z6K5 226 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 ZFPM1Q8IX07 1006 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 THNSL1Q8IYQ7 743 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 CCDC33Q8N5R6 958 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 SAMD3Q8N6K7 520 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 GSTCDQ8NEC7 633 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 ACTL9Q8TC94 416 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 RSAD2Q8WXG1 361 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 POMGNT1Q8WZA1 660 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 Q9H521 79 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 DHX33Q9H6R0 707 aaKnown RBP10.08□□□□□ -0.8
SYNE1-230ENST00000495090 PRDM16Q9HAZ2 1276 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 THAP1Q9NVV9 213 aa10.08□□□□□ -0.8
SYNE1-230ENST00000495090 DDTLA6NHG4 134 aaPredicted RBP10.07□□□□□ -0.8
SYNE1-230ENST00000495090 KBTBD13C9JR72 458 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 TRDMT1O14717 391 aaKnown RBP10.07□□□□□ -0.8
SYNE1-230ENST00000495090 VILLO15195 856 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 HLA-DRAP01903 254 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 C4BPAP04003 597 aaKnown RBP10.07□□□□□ -0.8
SYNE1-230ENST00000495090 KRT7P08729 469 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 ITGB5P18084 799 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 PRKCHP24723 683 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 ACAT1P24752 427 aaKnown RBP10.07□□□□□ -0.8
SYNE1-230ENST00000495090 PEX2P28328 305 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 L1CAMP32004 1257 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 ELK3P41970 407 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 COPAP53621 1224 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 KCNQ4P56696 695 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 MRPS5P82675 430 aaKnown RBP10.07□□□□□ -0.8
SYNE1-230ENST00000495090 DLG1Q12959 904 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 CHI3L2Q15782 390 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 USP41Q3LFD5 358 aa10.07□□□□□ -0.8
SYNE1-230ENST00000495090 RABGAP1LQ5R372 815 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms