RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 MRPL45Q9BRJ2 306 aaKnown RBP11.26□□□□□ -0.61
USP4-214ENST00000491791 C11orf84Q9BUA3 381 aaPredicted RBP11.26□□□□□ -0.61
USP4-214ENST00000491791 FAM49AQ9H0Q0 323 aaPredicted RBP11.26□□□□□ -0.61
USP4-214ENST00000491791 C11orf49Q9H6J7 331 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 SYNCQ9H7C4 482 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 CHST12Q9NRB3 414 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 METTL5Q9NRN9 209 aaKnown RBP11.26□□□□□ -0.61
USP4-214ENST00000491791 EURLQ9NYK6 297 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 TJP2Q9UDY2 1190 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 TPX2Q9ULW0 747 aaKnown RBP11.26□□□□□ -0.61
USP4-214ENST00000491791 USP18Q9UMW8 372 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 ACTL7BQ9Y614 415 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 DOCK3Q8IZD9 2030 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 C17orf102A2RUQ5 167 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 PI4K2BG5E9Z4 385 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 GOLGA8SH3BPF8 625 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 APOC4-APOC2K7ER74 178 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 ALOX15BO15296 676 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 RGS16O15492 202 aaPredicted RBP11.25□□□□□ -0.61
USP4-214ENST00000491791 TREHO43280 583 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 TRAPPC3O43617 180 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 FAM107AO95990 144 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 APOC2P02655 101 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 AKR1A1P14550 325 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 CYP2B6P20813 491 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 WARSP23381 471 aaKnown RBP11.25□□□□□ -0.61
USP4-214ENST00000491791 PAX3P23760 479 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 ATP5DP30049 168 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 STIP1P31948 543 aaKnown RBP11.25□□□□□ -0.61
USP4-214ENST00000491791 BMP8BP34820 402 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 CHKAP35790 457 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 SSR1P43307 286 aaKnown RBP11.25□□□□□ -0.61
USP4-214ENST00000491791 ACADSBP45954 432 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 FSCN1Q16658 493 aaKnown RBP11.25□□□□□ -0.61
USP4-214ENST00000491791 ODF2Q5BJF6 829 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 DNAJC21Q5F1R6 531 aaKnown RBP11.25□□□□□ -0.61
USP4-214ENST00000491791 FAM47CQ5HY64 1035 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 FBXO47Q5MNV8 452 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 RNASEH2BQ5TBB1 312 aaKnown RBP11.25□□□□□ -0.61
USP4-214ENST00000491791 IZUMO3Q5VZ72 239 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 OLFML1Q6UWY5 402 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 B4GALNT4Q76KP1 1039 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 SLC26A9Q7LBE3 791 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 TTC30AQ86WT1 665 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 SMG8Q8ND04 991 aaKnown RBP11.25□□□□□ -0.61
USP4-214ENST00000491791 SPATA18Q8TC71 538 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 BCAS4Q8TDM0 211 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 DIS3LQ8TF46 1054 aaKnown RBP11.25□□□□□ -0.61
USP4-214ENST00000491791 KBTBD7Q8WVZ9 684 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 FAF2Q96CS3 445 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 RTP4Q96DX8 246 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 CCDC114Q96M63 670 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 PPP1R16BQ96T49 567 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 FAM107BQ9H098 131 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 NINJ2Q9NZG7 142 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 TUBGCP4Q9UGJ1 667 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 FARP1Q9Y4F1 1045 aaPredicted RBP11.25□□□□□ -0.61
USP4-214ENST00000491791 NME7Q9Y5B8 376 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 SNX9Q9Y5X1 595 aa11.25□□□□□ -0.61
USP4-214ENST00000491791 KPNA7A9QM74 516 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 E5RJQ4 531 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 E7ESA3 106 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 CST8O60676 142 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 GABBR2O75899 941 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 PRKAR2AP13861 404 aaKnown RBP11.24□□□□□ -0.61
USP4-214ENST00000491791 PDGFRAP16234 1089 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 FGFR4P22455 802 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 TAF6P49848 677 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 ATP1A2P50993 1020 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 SLC18A1P54219 525 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 GUCY1A3Q02108 690 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 CCL14Q16627 93 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 GOLGA7BQ2TAP0 167 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 SV2CQ496J9 727 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 CCDC14Q49A88 953 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 ZC3H12AQ5D1E8 599 aaKnown RBP11.24□□□□□ -0.61
USP4-214ENST00000491791 ERMARDQ5T6L9 678 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 PPP1R26Q5T8A7 1209 aaPredicted RBP11.24□□□□□ -0.61
USP4-214ENST00000491791 FAM102AQ5T9C2 384 aaPredicted RBP11.24□□□□□ -0.61
USP4-214ENST00000491791 TRNP1Q6NT89 227 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 GPR153Q6NV75 609 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 PMF1Q6P1K2 205 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 FAM183BPQ6ZVS7 135 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 TAOK1Q7L7X3 1001 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 YTHDF3Q7Z739 585 aaKnown RBP11.24□□□□□ -0.61
USP4-214ENST00000491791 PSTKQ8IV42 348 aaKnown RBP11.24□□□□□ -0.61
USP4-214ENST00000491791 MAP7D3Q8IWC1 876 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 TMEM130Q8N3G9 435 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 UBA3Q8TBC4 463 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 ACTL9Q8TC94 416 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 TMEM40Q8WWA1 233 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 RXFP2Q8WXD0 754 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 ZBTB9Q96C00 473 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 MTG1Q9BT17 334 aaPredicted RBP11.24□□□□□ -0.61
USP4-214ENST00000491791 CXCL16Q9H2A7 254 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 NXF3Q9H4D5 531 aaKnown RBP11.24□□□□□ -0.61
USP4-214ENST00000491791 LRRC4CQ9HCJ2 640 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 HESX1Q9UBX0 185 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 OGDHLQ9ULD0 1010 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 ZMYND8Q9ULU4 1186 aaPredicted RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms