RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 MAP1SQ66K74 1059 aaPredicted RBP18.76■□□□□ 0.59
VIM-206ENST00000487938 PLPPR4Q7Z2D5 763 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 MCRS1Q96EZ8 462 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 CPB2Q96IY4 423 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 TACO1Q9BSH4 297 aaKnown RBP18.76■□□□□ 0.59
VIM-206ENST00000487938 CYLDQ9NQC7 956 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.76■□□□□ 0.59
VIM-206ENST00000487938 ASNSD1Q9NWL6 643 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 PPP2R3BQ9Y5P8 575 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 ANK1P16157 1881 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 POLR2AP24928 1970 aaKnown RBP18.76■□□□□ 0.59
VIM-206ENST00000487938 DIAPH2O60879 1101 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 CILPO75339 1184 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 RNASELQ05823 741 aaKnown RBP18.76■□□□□ 0.59
VIM-206ENST00000487938 TAF1BQ53T94 588 aaPredicted RBP18.76■□□□□ 0.59
VIM-206ENST00000487938 KIRREL3Q8IZU9 778 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 ZNF276Q8N554 614 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 BANPQ8N9N5 519 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 LRRN4Q8WUT4 740 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 PIWIL1Q96J94 861 aaKnown RBP18.76■□□□□ 0.59
VIM-206ENST00000487938 RAB3IPQ96QF0 476 aaPredicted RBP18.76■□□□□ 0.59
VIM-206ENST00000487938 SGIP1Q9BQI5 828 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 RNPEPQ9H4A4 650 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.76■□□□□ 0.59
VIM-206ENST00000487938 TNFSF13BQ9Y275 285 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 C15orf41Q9Y2V0 281 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 PPME1Q9Y570 386 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 LOC285556D6RIA3 1793 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 IL18RAPO95256 599 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 TRNP1Q6NT89 227 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 RPAINQ86UA6 219 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 RFWD2Q8NHY2 731 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 RXFP2Q8WXD0 754 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 FGD4Q96M96 766 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 RSAD1Q9HA92 442 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 SSU72Q9NP77 194 aaKnown RBP18.75■□□□□ 0.59
VIM-206ENST00000487938 NOP53Q9NZM5 478 aaKnown RBP18.75■□□□□ 0.59
VIM-206ENST00000487938 FETUBQ9UGM5 382 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 NUMBLQ9Y6R0 609 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 EVPLQ92817 2033 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 WDR90Q96KV7 1748 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 H7C0C1 242 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 ATP5HO75947 161 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 MAP3K6O95382 1288 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 MT-ND3P03897 115 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 ATP5OP48047 213 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 GCLCP48506 637 aaPredicted RBP18.75■□□□□ 0.59
VIM-206ENST00000487938 ROR1Q01973 937 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 R3HDM1Q15032 1099 aaKnown RBP18.75■□□□□ 0.59
VIM-206ENST00000487938 OR6B2Q6IFH4 312 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 NLRP9Q7RTR0 991 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 MTDHQ86UE4 582 aaKnown RBP18.75■□□□□ 0.59
VIM-206ENST00000487938 CCDC125Q86Z20 511 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 PTPRN2Q92932 1015 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 SLC7A6OSQ96CW6 309 aaPredicted RBP18.75■□□□□ 0.59
VIM-206ENST00000487938 LRMDAQ9H2I8 198 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 MANSC1Q9H8J5 431 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 PDGFCQ9NRA1 345 aa18.75■□□□□ 0.59
VIM-206ENST00000487938 KBTBD13C9JR72 458 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 CNMDO75829 334 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 PDGFRAP16234 1089 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 GABRB2P47870 512 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 YWHAGP61981 247 aaKnown RBP eCLIP18.74■□□□□ 0.59
VIM-206ENST00000487938 FAAP100Q0VG06 881 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 Q3C1V9 767 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 KBTBD12Q3ZCT8 623 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 WDR78Q5VTH9 848 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 LRRC6Q86X45 466 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 EXOC8Q8IYI6 725 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 CXorf38Q8TB03 319 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 SERAC1Q96JX3 654 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 IFT122Q9HBG6 1241 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 GPATCH2LQ9NWQ4 482 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 TCRBV9S1A1TA0A576 114 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 IRF6O14896 467 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 LPXNO60711 386 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 ATP2A2P16615 1042 aaKnown RBP18.74■□□□□ 0.59
VIM-206ENST00000487938 CYP3A5P20815 502 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 ZNF143P52747 638 aaPredicted RBP18.74■□□□□ 0.59
VIM-206ENST00000487938 PTK7Q13308 1070 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 ZC3H12AQ5D1E8 599 aaKnown RBP18.74■□□□□ 0.59
VIM-206ENST00000487938 FYB2Q5VWT5 728 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 SCYL2Q6P3W7 929 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 CYP4V2Q6ZWL3 525 aaPredicted RBP18.74■□□□□ 0.59
VIM-206ENST00000487938 LONP2Q86WA8 852 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 FAF2Q96CS3 445 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 HPDLQ96IR7 371 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 CYTH2Q99418 400 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 PHACTR1Q9C0D0 580 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 TXNRD2Q9NNW7 524 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 ZFP69BQ9UJL9 534 aa18.74■□□□□ 0.59
VIM-206ENST00000487938 A0A087WZ62 844 aa18.73■□□□□ 0.59
VIM-206ENST00000487938 E5RJQ4 531 aa18.73■□□□□ 0.59
VIM-206ENST00000487938 FAM155BO75949 473 aa18.73■□□□□ 0.59
VIM-206ENST00000487938 TXNP10599 105 aaKnown RBP18.73■□□□□ 0.59
VIM-206ENST00000487938 GPD1P21695 349 aa18.73■□□□□ 0.59
VIM-206ENST00000487938 RGS7P49802 495 aa18.73■□□□□ 0.59
VIM-206ENST00000487938 NDST1P52848 882 aa18.73■□□□□ 0.59
VIM-206ENST00000487938 FAXCQ5TGI0 409 aa18.73■□□□□ 0.59
VIM-206ENST00000487938 FAM183BPQ6ZVS7 135 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 106.8 ms