RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 BHMT2Q9H2M3 363 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 PLEKHA5Q9HAU0 1116 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 TMEM59LQ9UK28 342 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 FBXL5Q9UKA1 691 aa8.07□□□□□ -1.12
USP4-211ENST00000485450 USP15Q9Y4E8 981 aaPredicted RBP8.07□□□□□ -1.12
USP4-211ENST00000485450 A0A1W2PQJ5 194 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 DDX39AO00148 427 aaKnown RBP8.06□□□□□ -1.12
USP4-211ENST00000485450 O00370 1275 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 ARHGAP33O14559 1287 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 GARTP22102 1010 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 EEF1GP26641 437 aaKnown RBP8.06□□□□□ -1.12
USP4-211ENST00000485450 CASP1P29466 404 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 HNRNPH3P31942 346 aaKnown RBP8.06□□□□□ -1.12
USP4-211ENST00000485450 SH3BGRP55822 239 aaPredicted RBP8.06□□□□□ -1.12
USP4-211ENST00000485450 EIF3BP55884 814 aaKnown RBP8.06□□□□□ -1.12
USP4-211ENST00000485450 TNNC1P63316 161 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 HLTFQ14527 1009 aaKnown RBP eCLIP8.06□□□□□ -1.12
USP4-211ENST00000485450 SHHQ15465 462 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 KRT71Q3SY84 523 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 SPDYCQ5MJ68 293 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 CD300LGQ6UXG3 332 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 PIGOQ8TEQ8 1089 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 NELFBQ8WX92 580 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 ADAM7Q9H2U9 754 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 PDP2Q9P2J9 529 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 CHMP2BQ9UQN3 213 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 LRCH1Q9Y2L9 728 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 RWDD3Q9Y3V2 267 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 A0A0B4J269 797 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 DYTNA2CJ06 578 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 LILRB3O75022 631 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 FGBP02675 491 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 SHBGP04278 402 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 PDE6CP51160 858 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 CLCN3P51790 818 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 HPCAP84074 193 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 RRAGBQ5VZM2 374 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 TMEM184AQ6ZMB5 413 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 NT5DC4Q86YG4 428 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 UBLCP1Q8WVY7 318 aaPredicted RBP8.06□□□□□ -1.12
USP4-211ENST00000485450 GIMAP1Q8WWP7 306 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 UTP4Q969X6 686 aaKnown RBP8.06□□□□□ -1.12
USP4-211ENST00000485450 PPP1R10Q96QC0 940 aaKnown RBP8.06□□□□□ -1.12
USP4-211ENST00000485450 SLC39A3Q9BRY0 314 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 RXFP1Q9HBX9 757 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 PFDN4Q9NQP4 134 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 ST3GAL5Q9UNP4 418 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 GIT1Q9Y2X7 761 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 GJB6O95452 261 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 ITGA2BP08514 1039 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 ACTN1P12814 892 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 GM2AP17900 193 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 THPOP40225 353 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 PTDSS1P48651 473 aaKnown RBP8.06□□□□□ -1.12
USP4-211ENST00000485450 POLGP54098 1239 aaPredicted RBP8.06□□□□□ -1.12
USP4-211ENST00000485450 PLCB3Q01970 1234 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 UBE3AQ05086 875 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 DMPKQ09013 629 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 FIGNQ5HY92 759 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 C9orf50Q5SZB4 431 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 TCERG1LQ5VWI1 586 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 HERC6Q8IVU3 1022 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 CARD9Q9H257 536 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 IRAK3Q9Y616 596 aa8.06□□□□□ -1.12
USP4-211ENST00000485450 CHMP2AO43633 222 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 SERPINB7O75635 380 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 CACNA2D1P54289 1103 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 MTERF2Q49AM1 385 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 XKR9Q5GH70 373 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 SH2D4BQ5SQS7 431 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 SLC27A1Q6PCB7 646 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 TMC3Q7Z5M5 1100 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 STKLD1Q8NE28 680 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 DDX12PQ92771 950 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 COMMD3-BMI1R4GMX3 469 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.05□□□□□ -1.12
USP4-211ENST00000485450 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.05□□□□□ -1.12
USP4-211ENST00000485450 SPTLC1O15269 473 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 LPXNO60711 386 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 PFDN1O60925 122 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 SUN1O94901 812 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 RB1P06400 928 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 TRIM21P19474 475 aaKnown RBP8.05□□□□□ -1.12
USP4-211ENST00000485450 MARK3P27448 753 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 HALP42357 657 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 IKBKEQ14164 716 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 RAB30Q15771 203 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 CLLU1OSQ5K130 101 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 C15orf39Q6ZRI6 1047 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 LRRC55Q6ZSA7 311 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 ZNF365Q70YC5 407 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 GATA6Q92908 595 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 PGM2Q96G03 612 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 NOX5Q96PH1 765 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 GBP5Q96PP8 586 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 CCDC28BQ9BUN5 200 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 SPATA16Q9BXB7 569 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 NEUROG2Q9H2A3 272 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 PARVGQ9HBI0 331 aa8.05□□□□□ -1.12
USP4-211ENST00000485450 FAM114A2Q9NRY5 505 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms