RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 PHF24Q9UPV7 400 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 CHMP2BQ9UQN3 213 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 EFR3BQ9Y2G0 817 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 F8VP50 259 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 TNNI1P19237 187 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 STIP1P31948 543 aaKnown RBP13.86□□□□□ -0.19
USP40-214ENST00000483519 SSTR3P32745 418 aaPredicted RBP13.86□□□□□ -0.19
USP40-214ENST00000483519 RPL22P35268 128 aaKnown RBP13.86□□□□□ -0.19
USP40-214ENST00000483519 TMPRSS15P98073 1019 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 XIAPP98170 497 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 OTUD4Q01804 1114 aaKnown RBP13.86□□□□□ -0.19
USP40-214ENST00000483519 TAP1Q03518 808 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 ZNF252P-AS1Q0IIN9 211 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 MDH1BQ5I0G3 518 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 DHDDSQ86SQ9 333 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 PDSS2Q86YH6 399 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 ARID3BQ8IVW6 561 aaPredicted RBP13.86□□□□□ -0.19
USP40-214ENST00000483519 PIP4K2CQ8TBX8 421 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 ACTL9Q8TC94 416 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 FAM172AQ8WUF8 416 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 ZNF516Q92618 1163 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 EBF3Q9H4W6 596 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 TCEAL9Q9UHQ7 104 aa13.86□□□□□ -0.19
USP40-214ENST00000483519 SMIM31A0A1B0GVY4 71 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 TCRBV9S1A1TA0A576 114 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 TESPA1A2RU30 521 aaPredicted RBP13.85□□□□□ -0.19
USP40-214ENST00000483519 BUD23O43709 281 aaKnown RBP13.85□□□□□ -0.19
USP40-214ENST00000483519 USP1O94782 785 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 TMEM63AO94886 807 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 GDF10P55107 478 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 CLDN10P78369 228 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 JAG1P78504 1218 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 MAP3K10Q02779 954 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 HIC1Q14526 733 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 KBTBD12Q3ZCT8 623 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 STRIP1Q5VSL9 837 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 TTC39BQ5VTQ0 682 aaPredicted RBP13.85□□□□□ -0.19
USP40-214ENST00000483519 RAPH1Q70E73 1250 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 NAT14Q8WUY8 206 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 E2F7Q96AV8 911 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 ACSF2Q96CM8 615 aaPredicted RBP13.85□□□□□ -0.19
USP40-214ENST00000483519 ACAP3Q96P50 834 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 C17orf75Q9HAS0 396 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 TBC1D22BQ9NU19 505 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 NDUFA13Q9P0J0 144 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 PIM1P11309 404 aaPredicted RBP13.85□□□□□ -0.19
USP40-214ENST00000483519 TBXAS1P24557 533 aaPredicted RBP13.85□□□□□ -0.19
USP40-214ENST00000483519 DYNLT1P63172 113 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 BST1Q10588 318 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 PSMD6Q15008 389 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 UGCGQ16739 394 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 PABPC1LQ4VXU2 614 aaKnown RBP13.85□□□□□ -0.19
USP40-214ENST00000483519 PLA2G4FQ68DD2 849 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 SPOPLQ6IQ16 392 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 ARMCX6Q7L4S7 300 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 TRMT1LQ7Z2T5 733 aaKnown RBP13.85□□□□□ -0.19
USP40-214ENST00000483519 POLNQ7Z5Q5 900 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 CRLF3Q8IUI8 442 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 NTPCRQ9BSD7 190 aaKnown RBP13.85□□□□□ -0.19
USP40-214ENST00000483519 CCDC106Q9BWC9 280 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 S100A14Q9HCY8 104 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 SOX13Q9UN79 622 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 SORCS3Q9UPU3 1222 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 RPS6KL1Q9Y6S9 549 aa13.85□□□□□ -0.19
USP40-214ENST00000483519 FZD9O00144 591 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 SERPINA6P08185 405 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 ELK3P41970 407 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 ERFP50548 548 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 BASP1P80723 227 aaKnown RBP13.84□□□□□ -0.19
USP40-214ENST00000483519 SPP2Q13103 211 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 TKFCQ3LXA3 575 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 EFHC1Q5JVL4 640 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 TDRD10Q5VZ19 366 aaKnown RBP13.84□□□□□ -0.19
USP40-214ENST00000483519 LMBRD2Q68DH5 695 aaPredicted RBP13.84□□□□□ -0.19
USP40-214ENST00000483519 TXNRD3NBQ6F5E7 133 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 DPY19L2Q6NUT2 758 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 NIPA2Q8N8Q9 360 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 RAB3IL1Q8TBN0 382 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 APBB2Q92870 758 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 FAM84AQ96KN4 292 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 KBTBD13C9JR72 458 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 EXTL3O43909 919 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 KRT37O76014 449 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 UQCRBP14927 111 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 MYH9P35579 1960 aaKnown RBP13.84□□□□□ -0.19
USP40-214ENST00000483519 HSD17B4P51659 736 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 JAK3P52333 1124 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 ALDH18A1P54886 795 aaKnown RBP13.84□□□□□ -0.19
USP40-214ENST00000483519 AQP5P55064 265 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 YWHAGP61981 247 aaKnown RBP eCLIP13.84□□□□□ -0.19
USP40-214ENST00000483519 MTM1Q13496 603 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 MTMR1Q13613 665 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 GRM2Q14416 872 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 SH2D4BQ5SQS7 431 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 MAP3K21Q5TCX8 1036 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 SLC26A11Q86WA9 606 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 LDHDQ86WU2 507 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 ANKRD13AQ8IZ07 590 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 SAMD3Q8N6K7 520 aa13.84□□□□□ -0.19
USP40-214ENST00000483519 RILPQ96NA2 401 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms