RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 ARL5CA6NH57 179 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 GOLGA8JA6NMD2 632 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 KRTAP9-7A8MTY7 169 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 GOLGA6L6A8MZA4 724 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 TISP43B9A030 160 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 ABLIM1O14639 778 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 MAPK13O15264 365 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 SLC16A3O15427 465 aaKnown RBP6.65□□□□□ -1.34
SF3B1-209ENST00000479532 SART1O43290 800 aaKnown RBP6.65□□□□□ -1.34
SF3B1-209ENST00000479532 TGFB1I1O43294 461 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 KLF4O43474 513 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 STX10O60499 249 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 ATE1O95260 518 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 HTR3BO95264 441 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 GNA14O95837 355 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 CXCL8P10145 99 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 ATF7P17544 494 aaPredicted RBP6.65□□□□□ -1.34
SF3B1-209ENST00000479532 LAG3P18627 525 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 HOXD13P35453 343 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 PSMC2P35998 433 aaKnown RBP6.65□□□□□ -1.34
SF3B1-209ENST00000479532 ACOT2P49753 483 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 TPM4P67936 248 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 HTRA4P83105 476 aaPredicted RBP6.65□□□□□ -1.34
SF3B1-209ENST00000479532 CBX1P83916 185 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 SATB1Q01826 763 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 BMS1Q14692 1282 aaKnown RBP6.65□□□□□ -1.34
SF3B1-209ENST00000479532 TMEM132DQ14C87 1099 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 SNRNP35Q16560 246 aaKnown RBP6.65□□□□□ -1.34
SF3B1-209ENST00000479532 DUOXA2Q1HG44 320 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 LRIT3Q3SXY7 679 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 CCDC40Q4G0X9 1142 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 SLC39A4Q6P5W5 647 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 FOXR2Q6PJQ5 311 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 INTS8Q75QN2 995 aaKnown RBP6.65□□□□□ -1.34
SF3B1-209ENST00000479532 LSRQ86X29 649 aaPredicted RBP6.65□□□□□ -1.34
SF3B1-209ENST00000479532 BRSK2Q8IWQ3 736 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 FAM186BQ8IYM0 893 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 CSGALNACT2Q8N6G5 542 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 BEST2Q8NFU1 509 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 TMEM174Q8WUU8 243 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 ZNF689Q96CS4 500 aaPredicted RBP6.65□□□□□ -1.34
SF3B1-209ENST00000479532 SAAL1Q96ER3 474 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 ANKRD36BP1Q96IX9 119 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 SNX27Q96L92 541 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 UROC1Q96N76 676 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 CASD1Q96PB1 797 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 GAD1Q99259 594 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 TMEM175Q9BSA9 504 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 PRO3102Q9H379 93 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 ASB7Q9H672 318 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 SLC28A3Q9HAS3 691 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 STK39Q9UEW8 545 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 CPSF3Q9UKF6 684 aaKnown RBP6.65□□□□□ -1.34
SF3B1-209ENST00000479532 UBQLN1Q9UMX0 589 aaKnown RBP6.65□□□□□ -1.34
SF3B1-209ENST00000479532 DERAQ9Y315 318 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 PCDHB12Q9Y5F1 795 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 CORINQ9Y5Q5 1042 aa6.65□□□□□ -1.34
SF3B1-209ENST00000479532 TMEM265A0A087WTH1 108 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 ARHGEF37A1IGU5 675 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 SYCE3A1L190 88 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 PRAMEF27A3QJZ7 478 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 SMTNL1A8MU46 457 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 VGLL3A8MV65 326 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 LACTBL1A8MY62 500 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 INPPL1O15357 1258 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 ZC3H11AO75152 810 aaKnown RBP eCLIP6.64□□□□□ -1.353e-7■■■□□ 15.3
SF3B1-209ENST00000479532 WISP1O95388 367 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 CAVIN2O95810 425 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 POMCP01189 267 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 TNNC2P02585 160 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 ALDH2P05091 517 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 TMEM191BP0C7N4 346 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 KCNE1P15382 129 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 TNNI1P19237 187 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 ADSSP30520 456 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 PPM1AP35813 382 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 TNFSF9P41273 254 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 ALDH7A1P49419 539 aaKnown RBP6.64□□□□□ -1.35
SF3B1-209ENST00000479532 SCNN1GP51170 649 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 RABGGTBP53611 331 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 AP3M2P53677 418 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 STX17P56962 302 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 ENPEPQ07075 957 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 CYP24A1Q07973 514 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 SERINC3Q13530 473 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 PSMD6Q15008 389 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 SLC10A6Q3KNW5 377 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 DPCR1Q3MIW9 517 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 ZSCAN23Q3MJ62 389 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 ZCWPW2Q504Y3 356 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 ZC3H12AQ5D1E8 599 aaKnown RBP6.64□□□□□ -1.35
SF3B1-209ENST00000479532 CLLU1OSQ5K130 101 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 ANKRD40Q6AI12 368 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 LRSAM1Q6UWE0 723 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 BEND4Q6ZU67 534 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 TMCO2Q7Z6W1 182 aaPredicted RBP6.64□□□□□ -1.35
SF3B1-209ENST00000479532 FILIP1Q7Z7B0 1213 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 NOP9Q86U38 636 aaKnown RBP6.64□□□□□ -1.35
SF3B1-209ENST00000479532 C12orf40Q86WS4 652 aa6.64□□□□□ -1.35
SF3B1-209ENST00000479532 FAM20CQ8IXL6 584 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms