RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 CCDC127Q96BQ5 260 aa14.41□□□□□ -0.1
CHD3-209ENST00000473376 MRPL45Q9BRJ2 306 aaKnown RBP14.41□□□□□ -0.1
CHD3-209ENST00000473376 GZF1Q9H116 711 aaPredicted RBP14.41□□□□□ -0.1
CHD3-209ENST00000473376 LINC00597Q9H2U6 94 aa14.41□□□□□ -0.1
CHD3-209ENST00000473376 DMAC2Q9NW81 257 aa14.41□□□□□ -0.1
CHD3-209ENST00000473376 RCOR1Q9UKL0 485 aa14.41□□□□□ -0.1
CHD3-209ENST00000473376 A8MXQ7 604 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.4□□□□□ -0.1
CHD3-209ENST00000473376 TULP1O00294 542 aaPredicted RBP14.4□□□□□ -0.1
CHD3-209ENST00000473376 MAPK13O15264 365 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 EXOC3O60645 756 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 P4HA1P13674 534 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 YWHAQP27348 245 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 OPRD1P41143 372 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 DGKEP52429 567 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 MYL6P60660 151 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 ZXDBP98169 803 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 TAF10Q12962 218 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 CCDC142Q17RM4 750 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 SGSM1Q2NKQ1 1148 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 USP39Q53GS9 565 aaKnown RBP14.4□□□□□ -0.1
CHD3-209ENST00000473376 SPDYCQ5MJ68 293 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 IL31Q6EBC2 164 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 CEP57L1Q8IYX8 460 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 FAM84AQ96KN4 292 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 CNOT6LQ96LI5 555 aaKnown RBP14.4□□□□□ -0.1
CHD3-209ENST00000473376 RNF38Q9H0F5 515 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 DUSP15Q9H1R2 295 aaPredicted RBP14.4□□□□□ -0.1
CHD3-209ENST00000473376 ARRDC1-AS1Q9H2J1 176 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 MMP17Q9ULZ9 603 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 PCDHA7Q9UN72 937 aa14.4□□□□□ -0.1
CHD3-209ENST00000473376 K7EQS6 105 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 PDXKO00764 312 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 CLIC2O15247 247 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 PHACTR2O75167 634 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 KIF20AO95235 890 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 ADH1CP00326 375 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 F13A1P00488 732 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 C4BPAP04003 597 aaKnown RBP14.39□□□□□ -0.11
CHD3-209ENST00000473376 ZDHHC11BP0C7U3 371 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 TRIM21P19474 475 aaKnown RBP14.39□□□□□ -0.11
CHD3-209ENST00000473376 MPLP40238 635 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 TNFRSF4P43489 277 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 ME1P48163 572 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 CYP2J2P51589 502 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 DHCR24Q15392 516 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 GAB4Q2WGN9 574 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 AASDHQ4L235 1098 aaPredicted RBP14.39□□□□□ -0.11
CHD3-209ENST00000473376 ZNF667Q5HYK9 610 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 PPM1JQ5JR12 505 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 NUDT18Q6ZVK8 323 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 UNC93AQ86WB7 457 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 CRYBG2Q8N1P7 616 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 TMC2Q8TDI7 906 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 SMARCD1Q96GM5 515 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 B3GNT5Q9BYG0 378 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 SLC39A2Q9NP94 309 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 DMAP1Q9NPF5 467 aaPredicted RBP14.39□□□□□ -0.11
CHD3-209ENST00000473376 NME7Q9Y5B8 376 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 CPQQ9Y646 472 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 GREB1Q4ZG55 1949 aa14.39□□□□□ -0.11
CHD3-209ENST00000473376 ZNF638Q14966 1978 aaKnown RBP14.38□□□□□ -0.11
CHD3-209ENST00000473376 TNFRSF10BO14763 440 aa14.38□□□□□ -0.11
CHD3-209ENST00000473376 ALDH1A2O94788 518 aa14.38□□□□□ -0.11
CHD3-209ENST00000473376 CYP17A1P05093 508 aa14.38□□□□□ -0.11
CHD3-209ENST00000473376 GRIA2P42262 883 aa14.38□□□□□ -0.11
CHD3-209ENST00000473376 DPP6P42658 865 aa14.38□□□□□ -0.11
CHD3-209ENST00000473376 MCCD1P59942 119 aaPredicted RBP14.38□□□□□ -0.11
CHD3-209ENST00000473376 NCOA4Q13772 614 aa14.38□□□□□ -0.11
CHD3-209ENST00000473376 CRY1Q16526 586 aa14.38□□□□□ -0.11
CHD3-209ENST00000473376 NFIL3Q16649 462 aa14.38□□□□□ -0.11
CHD3-209ENST00000473376 HECTD3Q5T447 861 aa14.38□□□□□ -0.11
CHD3-209ENST00000473376 FILIP1Q7Z7B0 1213 aa14.38□□□□□ -0.11
CHD3-209ENST00000473376 NELFCDQ8IXH7 590 aa14.38□□□□□ -0.11
CHD3-209ENST00000473376 TSTD1Q8NFU3 115 aa14.38□□□□□ -0.11
CHD3-209ENST00000473376 FAXDC2Q96IV6 333 aa14.38□□□□□ -0.11
CHD3-209ENST00000473376 HHIPQ96QV1 700 aa14.38□□□□□ -0.11
CHD3-209ENST00000473376 PNKPQ96T60 521 aa14.38□□□□□ -0.11
CHD3-209ENST00000473376 ZNF518BQ9C0D4 1074 aa14.38□□□□□ -0.11
CHD3-209ENST00000473376 FBXO44Q9H4M3 255 aa14.38□□□□□ -0.11
CHD3-209ENST00000473376 CSNK1G1Q9HCP0 422 aa14.38□□□□□ -0.11
CHD3-209ENST00000473376 NXF1Q9UBU9 619 aaKnown RBP14.38□□□□□ -0.11
CHD3-209ENST00000473376 ANAPC1Q9H1A4 1944 aa14.38□□□□□ -0.11
CHD3-209ENST00000473376 PTPRDP23468 1912 aa14.37□□□□□ -0.11
CHD3-209ENST00000473376 BCLAF3A2AJT9 711 aaKnown RBP14.37□□□□□ -0.11
CHD3-209ENST00000473376 KLRC4O43908 158 aa14.37□□□□□ -0.11
CHD3-209ENST00000473376 GDF9O60383 454 aa14.37□□□□□ -0.11
CHD3-209ENST00000473376 CMA1P23946 247 aa14.37□□□□□ -0.11
CHD3-209ENST00000473376 PXNP49023 591 aaPredicted RBP14.37□□□□□ -0.11
CHD3-209ENST00000473376 SHC2P98077 582 aa14.37□□□□□ -0.11
CHD3-209ENST00000473376 GAD2Q05329 585 aa14.37□□□□□ -0.11
CHD3-209ENST00000473376 CUL4BQ13620 913 aa14.37□□□□□ -0.11
CHD3-209ENST00000473376 BYSLQ13895 437 aaKnown RBP14.37□□□□□ -0.11
CHD3-209ENST00000473376 ZNF699Q32M78 642 aa14.37□□□□□ -0.11
CHD3-209ENST00000473376 ZACNQ401N2 412 aa14.37□□□□□ -0.11
CHD3-209ENST00000473376 RHBDF2Q6PJF5 856 aa14.37□□□□□ -0.11
CHD3-209ENST00000473376 OLIG1Q8TAK6 271 aa14.37□□□□□ -0.11
CHD3-209ENST00000473376 LSM14BQ9BX40 385 aaKnown RBP14.37□□□□□ -0.11
CHD3-209ENST00000473376 DNAI2Q9GZS0 605 aa14.37□□□□□ -0.11
CHD3-209ENST00000473376 KCTD10Q9H3F6 313 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms