RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 CARM1Q86X55 608 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 LSM14AQ8ND56 463 aaKnown RBP5.59□□□□□ -1.52
SYNE1-220ENST00000471834 NAT14Q8WUY8 206 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 OXNAD1Q96HP4 312 aaPredicted RBP5.59□□□□□ -1.52
SYNE1-220ENST00000471834 ZFRQ96KR1 1074 aaKnown RBP5.59□□□□□ -1.52
SYNE1-220ENST00000471834 WDR18Q9BV38 432 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 AMNQ9BXJ7 453 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 TRIM31Q9BZY9 425 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 PCDHGB1Q9Y5G3 927 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 WASF2Q9Y6W5 498 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 GRXCR2A6NFK2 248 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 FTLP02792 175 aaPredicted RBP5.58□□□□□ -1.52
SYNE1-220ENST00000471834 NCAM1P13591 858 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 CCNA1P78396 465 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 ASPHQ12797 758 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 ZNF423Q2M1K9 1284 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 LMBRD2Q68DH5 695 aaPredicted RBP5.58□□□□□ -1.52
SYNE1-220ENST00000471834 APOBEC3HQ6NTF7 200 aaKnown RBP5.58□□□□□ -1.52
SYNE1-220ENST00000471834 DUS1LQ6P1R4 473 aaKnown RBP5.58□□□□□ -1.52
SYNE1-220ENST00000471834 SPATA24Q86W54 205 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 PYROXD1Q8WU10 500 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 SPOCK2Q92563 424 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 TANKQ92844 425 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 KANSL2Q9H9L4 492 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 POPDC2Q9HBU9 364 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 S100A14Q9HCY8 104 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 TMEM260Q9NX78 707 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 ADAMTS5Q9UNA0 930 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 ST14Q9Y5Y6 855 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 ZBTB7AO95365 584 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 CBX6O95503 412 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 NR1H2P55055 460 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 KRT17Q04695 432 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 PSMD6Q15008 389 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 TTC13Q8NBP0 860 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 ZNF564Q8TBZ8 553 aaPredicted RBP5.58□□□□□ -1.52
SYNE1-220ENST00000471834 U2AF1L4Q8WU68 220 aaKnown RBP5.58□□□□□ -1.52
SYNE1-220ENST00000471834 SEMA4DQ92854 862 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 MCRS1Q96EZ8 462 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 CATSPER2Q96P56 530 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 TBCBQ99426 244 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 YTHDF1Q9BYJ9 559 aaKnown RBP5.58□□□□□ -1.52
SYNE1-220ENST00000471834 PARVGQ9HBI0 331 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 NKIRAS1Q9NYS0 192 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.58□□□□□ -1.52
SYNE1-220ENST00000471834 DNAJB5O75953 348 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 ANPEPP15144 967 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 ATP11AP98196 1134 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 PCNX4Q63HM2 1172 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 TMC7Q7Z402 723 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 LRRC6Q86X45 466 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 ARHGEF19Q8IW93 802 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 RNF34Q969K3 372 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 BCL7BQ9BQE9 202 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 LHX5Q9H2C1 402 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 MAP10Q9P2G4 905 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 SERPINB13Q9UIV8 391 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 SCINQ9Y6U3 715 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 A3GALT2U3KPV4 340 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 APOC4-APOC2K7ER74 178 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 SIN3BO75182 1162 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 UFL1O94874 794 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 APOC2P02655 101 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 TTKP33981 857 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 FDFT1P37268 417 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 CLPPQ16740 277 aaPredicted RBP5.58□□□□□ -1.52
SYNE1-220ENST00000471834 METTL25Q8N6Q8 603 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 DYNLL2Q96FJ2 89 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 HTATIP2Q9BUP3 242 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 WRAP73Q9P2S5 460 aaPredicted RBP5.58□□□□□ -1.52
SYNE1-220ENST00000471834 PLLPQ9Y342 182 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 MAD1L1Q9Y6D9 718 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 MYH2Q9UKX2 1941 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 CACNG3O60359 315 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 ERBB2P04626 1255 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 ITGB5P18084 799 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 CDK9P50750 372 aaKnown RBP5.58□□□□□ -1.52
SYNE1-220ENST00000471834 COQ5Q5HYK3 327 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 ZNF484Q5JVG2 852 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 SLC26A11Q86WA9 606 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 TTC30AQ86WT1 665 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 CPNE8Q86YQ8 564 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 TRIM42Q8IWZ5 723 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 KIF2BQ8N4N8 673 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 SLC44A5Q8NCS7 719 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 ZSCAN18Q8TBC5 510 aaPredicted RBP5.58□□□□□ -1.52
SYNE1-220ENST00000471834 DLG3Q92796 817 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 PANX3Q96QZ0 392 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 NACC1Q96RE7 527 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 CCT7Q99832 543 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 CHCHD3Q9NX63 227 aaKnown RBP5.58□□□□□ -1.52
SYNE1-220ENST00000471834 C6orf203Q9P0P8 240 aaPredicted RBP5.58□□□□□ -1.52
SYNE1-220ENST00000471834 SLAIN2Q9P270 581 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 CEPT1Q9Y6K0 416 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 SLC30A1Q9Y6M5 507 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 CDK5RAP2Q96SN8 1893 aa5.58□□□□□ -1.52
SYNE1-220ENST00000471834 VARSP26640 1264 aaKnown RBP5.57□□□□□ -1.52
SYNE1-220ENST00000471834 STX2P32856 288 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 CYHR1Q6ZMK1 362 aa5.57□□□□□ -1.52
SYNE1-220ENST00000471834 PAPD5Q8NDF8 572 aaKnown RBP5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms