RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 ZSCAN30Q86W11 494 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 WDR49Q8IV35 697 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 LMO3Q8TAP4 145 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 TAS1R2Q8TE23 839 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 CPLX3Q8WVH0 158 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 SEMA4DQ92854 862 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 C18orf25Q96B23 403 aaPredicted RBP5.09□□□□□ -1.6
SF3B1-208ENST00000470268 FERD3LQ96RJ6 166 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 FNBP1Q96RU3 617 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 CGRRF1Q99675 332 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 CRACR2AQ9BSW2 395 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 CYP4F12Q9HCS2 524 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 IL23AQ9NPF7 189 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 RAD18Q9NS91 495 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 TUBGCP4Q9UGJ1 667 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 SIX4Q9UIU6 781 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 PPT2Q9UMR5 302 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 PCDHB14Q9Y5E9 798 aa5.09□□□□□ -1.6
SF3B1-208ENST00000470268 PES1O00541 588 aaKnown RBP5.08□□□□□ -1.6
SF3B1-208ENST00000470268 PPEF2O14830 753 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 EOMESO95936 686 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 POMCP01189 267 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 ACTN1P12814 892 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 KCNE1P15382 129 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 SLC9A1P19634 815 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 GIPRP48546 466 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 MXI1P50539 228 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 YARSP54577 528 aaKnown RBP5.08□□□□□ -1.6
SF3B1-208ENST00000470268 TFAMQ00059 246 aaKnown RBP5.08□□□□□ -1.6
SF3B1-208ENST00000470268 ID3Q02535 119 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 UBXN1Q04323 297 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 FPGSQ05932 587 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 ENPEPQ07075 957 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 SYCP1Q15431 976 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 KYAT1Q16773 422 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 EPC2Q52LR7 807 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 KRT39Q6A163 491 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 GK5Q6ZS86 529 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 ACAD11Q709F0 780 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 TRAPPC11Q7Z392 1133 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 CCDC186Q7Z3E2 898 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 OR6P1Q8NGX9 317 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 RABGGTAQ92696 567 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 TOP1MTQ969P6 601 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 PPP1R10Q96QC0 940 aaKnown RBP5.08□□□□□ -1.6
SF3B1-208ENST00000470268 PAAF1Q9BRP4 392 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 PI4K2AQ9BTU6 479 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 ASB7Q9H672 318 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 ELAC1Q9H777 363 aaKnown RBP5.08□□□□□ -1.6
SF3B1-208ENST00000470268 RSAD1Q9HA92 442 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 PLEKHA5Q9HAU0 1116 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 RC3H2Q9HBD1 1191 aaKnown RBP5.08□□□□□ -1.6
SF3B1-208ENST00000470268 TMEM8AQ9HCN3 771 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 SIX2Q9NPC8 291 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 C1orf112Q9NSG2 853 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 TMEM161AQ9NX61 479 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 CRIM1Q9NZV1 1036 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 AJAP1Q9UKB5 411 aaPredicted RBP5.08□□□□□ -1.6
SF3B1-208ENST00000470268 SIK3Q9Y2K2 1263 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 ZKSCAN5Q9Y2L8 839 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 GIT1Q9Y2X7 761 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 COQ4Q9Y3A0 265 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 C2CD2Q9Y426 696 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 COL4A6Q14031 1691 aa5.08□□□□□ -1.6
SF3B1-208ENST00000470268 ABHD14A-ACY1A0A1B0GW23 586 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 F8W810 466 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 PMM2O15305 246 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 INPPL1O15357 1258 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 TMPRSS2O15393 492 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 NOL4O94818 638 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 DDHD2O94830 711 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 IL18RAPO95256 599 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 ITGB3P05106 788 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 PFKMP08237 780 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 GLB1P16278 677 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 PON1P27169 355 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 MAGEA10P43363 369 aaPredicted RBP5.07□□□□□ -1.6
SF3B1-208ENST00000470268 MYL7Q01449 175 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 PPIGQ13427 754 aaKnown RBP eCLIP5.07□□□□□ -1.61e-8■□□□□ 10.8
SF3B1-208ENST00000470268 TMEM132DQ14C87 1099 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 C9orf50Q5SZB4 431 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 SPOPLQ6IQ16 392 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 GJB7Q6PEY0 223 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 APBB1IPQ7Z5R6 666 aaPredicted RBP5.07□□□□□ -1.6
SF3B1-208ENST00000470268 ZNF280BQ86YH2 543 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 RPUSD2Q8IZ73 545 aaKnown RBP5.07□□□□□ -1.6
SF3B1-208ENST00000470268 ANKRD20A12PQ8NF67 263 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 PGBD4Q96DM1 585 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 MRFAP1L1Q96HT8 127 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 CASD1Q96PB1 797 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 ERGIC2Q96RQ1 377 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 XYLT2Q9H1B5 865 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 APOBEC3GQ9HC16 384 aaKnown RBP5.07□□□□□ -1.6
SF3B1-208ENST00000470268 TBC1D13Q9NVG8 400 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 PRKAG3Q9UGI9 489 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 PCDHB7Q9Y5E2 793 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 OAS3Q9Y6K5 1087 aaKnown RBP5.07□□□□□ -1.6
SF3B1-208ENST00000470268 LTBP2Q14767 1821 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 CDH23Q9H251 3354 aa5.07□□□□□ -1.6
SF3B1-208ENST00000470268 ANO9A1A5B4 782 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms