RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 FOXP3Q9BZS1 431 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 CHMP2BQ9UQN3 213 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 PCDHA2Q9Y5H9 948 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 MYH3P11055 1940 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 GOLGA8QA0A0J9YX86 632 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.71□□□□□ -1.18
SYNE1-213ENST00000448038 GOLGA8OA6NCC3 632 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 E5RJQ4 531 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 GOLGA8NF8WBI6 632 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 KLRC2P26717 231 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 OTUD4Q01804 1114 aaKnown RBP7.71□□□□□ -1.18
SYNE1-213ENST00000448038 MAPK7Q13164 816 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 PDCLQ13371 301 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 ITIH5Q86UX2 942 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 FAM71AQ8IYT1 594 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 CCDC33Q8N5R6 958 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 SLC25A41Q8N5S1 370 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 GPATCH11Q8N954 259 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 EXOC4Q96A65 974 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 LENG9Q96B70 501 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 UROC1Q96N76 676 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 CHST12Q9NRB3 414 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.71□□□□□ -1.18
SYNE1-213ENST00000448038 GIT1Q9Y2X7 761 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 IPPQ9Y573 584 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 SNX2O60749 519 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 MAP7Q14244 749 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 TTC31Q49AM3 519 aaPredicted RBP7.71□□□□□ -1.18
SYNE1-213ENST00000448038 RABGAP1LQ5R372 815 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 FAM84AQ96KN4 292 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 ISCUQ9H1K1 167 aa7.71□□□□□ -1.18
SYNE1-213ENST00000448038 AVENQ9NQS1 362 aaPredicted RBP7.71□□□□□ -1.18
SYNE1-213ENST00000448038 DDX20Q9UHI6 824 aaKnown RBP7.71□□□□□ -1.18
SYNE1-213ENST00000448038 SMAPO00193 183 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 MYL4P12829 197 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 YWHAQP27348 245 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 PPP2R2AP63151 447 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 SLC12A1Q13621 1099 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 CNGA2Q16280 664 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 CCDC38Q502W7 563 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 FAXCQ5TGI0 409 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 RNF135Q8IUD6 432 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 CRLF3Q8IUI8 442 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 PPIL6Q8IXY8 311 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 MAML1Q92585 1016 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 ATP6V1G3Q96LB4 118 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 FRMD8P1Q9BZ68 369 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-213ENST00000448038 PITPNM3Q9BZ71 974 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 BCAP29Q9UHQ4 241 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 MYH13Q9UKX3 1938 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 AOC2O75106 756 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 SLC6A3Q01959 620 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 DENND1BQ6P3S1 775 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 TSHZ1Q6ZSZ6 1077 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 DEFB106AQ8N104 65 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 ACTRT1Q8TDG2 376 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 SHC3Q92529 594 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 ADAM33Q9BZ11 813 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 NDFIP2Q9NV92 336 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 GJB6O95452 261 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 CHEK2O96017 543 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 INHAP05111 366 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 CCR1P32246 355 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 MAGEA4P43358 317 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 MARSP56192 900 aaKnown RBP7.7□□□□□ -1.18
SYNE1-213ENST00000448038 ERMARDQ5T6L9 678 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 NAPEPLDQ6IQ20 393 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 IRF2BP1Q8IU81 584 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 C3orf20Q8ND61 904 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 RAB3IPQ96QF0 476 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-213ENST00000448038 HIPK3Q9H422 1215 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 RRN3Q9NYV6 651 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 G3BP2Q9UN86 482 aaKnown RBP7.7□□□□□ -1.18
SYNE1-213ENST00000448038 RPTORQ8N122 1335 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 SPAG7O75391 227 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 PMPCBO75439 489 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 RPL9P32969 192 aaKnown RBP7.7□□□□□ -1.18
SYNE1-213ENST00000448038 AVPR1AP37288 418 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 CTCFP49711 727 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-213ENST00000448038 FAM47EQ6ZV65 393 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 ZNF467Q7Z7K2 595 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-213ENST00000448038 GIPC2Q8TF65 315 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 ZNF558Q96NG5 402 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 CINPQ9BW66 212 aaPredicted RBP7.7□□□□□ -1.18
SYNE1-213ENST00000448038 ST6GALNAC4Q9H4F1 302 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 DPP7Q9UHL4 492 aa7.7□□□□□ -1.18
SYNE1-213ENST00000448038 VIRMAQ69YN4 1812 aaKnown RBP7.7□□□□□ -1.18
SYNE1-213ENST00000448038 ADCY6O43306 1168 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 ASS1P00966 412 aaKnown RBP7.69□□□□□ -1.18
SYNE1-213ENST00000448038 USP17L7P0C7H9 530 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 TUFMP49411 452 aaKnown RBP7.69□□□□□ -1.18
SYNE1-213ENST00000448038 KPNA1P52294 538 aaPredicted RBP7.69□□□□□ -1.18
SYNE1-213ENST00000448038 ZNF200P98182 395 aaPredicted RBP7.69□□□□□ -1.18
SYNE1-213ENST00000448038 KYNUQ16719 465 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 WDR59Q6PJI9 974 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 C3orf62Q6ZUJ4 267 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 BAP1Q92560 729 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 ULBP1Q9BZM6 244 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 TAS2R14Q9NYV8 317 aa7.69□□□□□ -1.18
SYNE1-213ENST00000448038 TSR3Q9UJK0 312 aaKnown RBP7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms