RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 LHX5Q9H2C1 402 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 METTL14Q9HCE5 456 aaKnown RBP2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 CHST12Q9NRB3 414 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 OLAHQ9NV23 265 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 GPR83Q9NYM4 423 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 GDE1Q9NZC3 331 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 CTNNAL1Q9UBT7 734 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 HESX1Q9UBX0 185 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 MTRF1LQ9UGC7 380 aaKnown RBP2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 UTS2RQ9UKP6 389 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 DIS3Q9Y2L1 958 aaKnown RBP2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 SNX9Q9Y5X1 595 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 ACTL7AQ9Y615 435 aa2.9□□□□□ -1.94
CCDC88A-205ENST00000426576 STMND1H3BQB6 276 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 M0QZ24 198 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 SMAD9O15198 467 aaKnown RBP2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 ZNF286BP0CG31 522 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 MPSTP25325 297 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 HTR1EP28566 365 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 SSR1P43307 286 aaKnown RBP2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 RFX5P48382 616 aaPredicted RBP2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 MASP1P48740 699 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 STAT5BP51692 787 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 CDK17Q00537 523 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 GAD2Q05329 585 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 KCNA1Q09470 495 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 PTP4A2Q12974 167 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 RCAN2Q14206 197 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 SOWAHCQ53LP3 525 aaPredicted RBP2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 CPLX4Q7Z7G2 160 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 GATAD2AQ86YP4 633 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 CCDC65Q8IXS2 484 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 MCUQ8NE86 351 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 SGMS2Q8NHU3 365 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 SLC20A1Q8WUM9 679 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 LENG1Q96BZ8 264 aaPredicted RBP2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 PNKPQ96T60 521 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 ABCC12Q96J65 1359 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 CACNB4O00305 520 aaPredicted RBP2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 DAPK3O43293 454 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 HRO43593 1189 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 HBP1O60381 514 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 GAS7O60861 476 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 MT-ND3P03897 115 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 RPN1P04843 607 aaKnown RBP2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 PRKCBP05771 671 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 QDPRP09417 244 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 PIM1P11309 404 aaPredicted RBP2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 CYP2A6P11509 494 aaPredicted RBP2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 CD46P15529 392 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 DDX5P17844 614 aaKnown RBP2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 VCAM1P19320 739 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 FPR1P21462 350 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 GNA11P29992 359 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 HOXD12P35452 270 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 SLC16A2P36021 539 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 IL15P40933 162 aaPredicted RBP2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 RCAN1P53805 252 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 NAPAP54920 295 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 MRPS6P82932 125 aaKnown RBP2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 FUT2Q10981 343 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 ADAM15Q13444 863 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 PTK2BQ14289 1009 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 SEMA3AQ14563 771 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 NFE2Q16621 373 aaPredicted RBP2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 RHPN2Q8IUC4 686 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 SPACA3Q8IXA5 215 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 REXO1Q8N1G1 1221 aaKnown RBP2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 MSANTD4Q8NCY6 345 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 ADAM32Q8TC27 787 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 HASPINQ8TF76 798 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 OSCP1Q8WVF1 389 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 ULK4Q96C45 1275 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 MYADMQ96S97 322 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 MIPEPQ99797 713 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 PTPN18Q99952 460 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 TTPALQ9BTX7 342 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 OSBPL6Q9BZF3 934 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 C1orf115Q9H7X2 142 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 PDE7BQ9NP56 450 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 FANCLQ9NW38 375 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 CAMSAP3Q9P1Y5 1249 aaPredicted RBP2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 POLLQ9UGP5 575 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 EHBP1L1Q8N3D4 1523 aa2.9□□□□□ -1.95
CCDC88A-205ENST00000426576 A0A1B0GVT2 93 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 PLD2O14939 933 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 B4GALT4O60513 344 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 SDC3O75056 442 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 ADCY5O95622 1261 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 BCRP11274 1271 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 PRF1P14222 555 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 CTSOP43234 321 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 HARS2P49590 506 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 CSNK1EP49674 416 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 PTSQ03393 145 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 PTK2Q05397 1052 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 FAM160A1Q05DH4 1040 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 KLRC3Q07444 240 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 CETN1Q12798 172 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 SLC14A1Q13336 389 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms