RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 DUOXA2Q1HG44 320 aa13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 IL31Q6EBC2 164 aa13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 IZUMO2Q6UXV1 221 aa13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 AIFM2Q9BRQ8 373 aa13.77□□□□□ -0.21
CCDC88A-204ENST00000413716 CHRM3P20309 590 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 STAT3P40763 770 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 CORO7P57737 925 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 PKP1Q13835 747 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 TPD52L3Q96J77 140 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 NPR2P20594 1047 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 EIF4A1P60842 406 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 C4orf22Q6V702 233 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 LRRC74BQ6ZQY2 392 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 CCSER1Q9C0I3 900 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 EEF2KO00418 725 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 MTSS1O43312 755 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 PLOD3O60568 738 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 LYNP07948 512 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 CLUP10909 449 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 FASP25445 335 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 IREB2P48200 963 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 BCAMP50895 628 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 GRIK3Q13003 919 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 ATG14Q6ZNE5 492 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 SLC7A14Q8TBB6 771 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 INSRP06213 1382 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 C2orf81A6NN90 581 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 VBP1P61758 197 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 DDX39BQ13838 428 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 FAM83BQ5T0W9 1011 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 PAK5Q9P286 719 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 CNOT7Q9UIV1 285 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 KDM5BQ9UGL1 1544 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 NEURL1BA8MQ27 555 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 TRAPPC3O43617 180 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 DLG1Q12959 904 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 ITGADQ13349 1161 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 KNOP1Q1ED39 458 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 C5orf22Q49AR2 442 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 TCAIMQ8N3R3 496 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 PLCL2Q9UPR0 1127 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 VPS26AO75436 327 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 CD2BP2O95400 341 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 LINC00301Q8NCQ3 95 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 MAGEB18Q96M61 343 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 DCUN1D5Q9BTE7 237 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 STK33Q9BYT3 514 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 PRKAG3Q9UGI9 489 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 CRLS1Q9UJA2 301 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 HOXA13P31271 388 aaPredicted RBP13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 PRELPP51888 382 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 TTC29Q8NA56 475 aaPredicted RBP13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 ZC3H10Q96K80 434 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 FBLN1P23142 703 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 GTF2H1P32780 548 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 JMJD4Q9H9V9 463 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 CHMP1AQ9HD42 196 aaPredicted RBP13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 SCUBE2Q9NQ36 999 aa13.76□□□□□ -0.21
CCDC88A-204ENST00000413716 RAB25P57735 213 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 HAUS6Q7Z4H7 955 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 EURLQ9NYK6 297 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 AKAP7Q9P0M2 348 aaPredicted RBP13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 UTYO14607 1347 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 LIN7AO14910 233 aaPredicted RBP13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 NFX1Q12986 1120 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 POLD3Q15054 466 aaPredicted RBP13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 DHX40Q8IX18 779 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 LEMD2Q8NC56 503 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 KLHL32Q96NJ5 620 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 RBAKQ9NYW8 714 aaPredicted RBP13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 RAD54BQ9Y620 910 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 DUOX2Q9NRD8 1548 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 LOC100653049A0A140TA62 436 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 SASH1O94885 1247 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 AKAP14Q86UN6 197 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 HPS6Q86YV9 775 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 TRIT1Q9H3H1 467 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 SLC52A2Q9HAB3 445 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 URB2Q14146 1524 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 CD3EAPO15446 510 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 RB1P06400 928 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 GSTM5P46439 218 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 GYG1P46976 350 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 PIGSQ96S52 555 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 WEE2P0C1S8 567 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 TGM2P21980 687 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 ZNF579Q8NAF0 562 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 NUP160Q12769 1436 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 CHURC1-FNTBB4DL54 471 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 CACNB2Q08289 660 aaPredicted RBP13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 SPIRE1Q08AE8 756 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 NFYCQ13952 458 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 ZFP1Q6P2D0 407 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 CAMKK1Q8N5S9 505 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 B3GALNT2Q8NCR0 500 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 GPRASP2Q96D09 838 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 C18orf8Q96DM3 657 aa13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 ZCCHC17Q9NP64 241 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 FAM217BQ9NTX9 383 aaPredicted RBP13.75□□□□□ -0.21
CCDC88A-204ENST00000413716 VTI1BQ9UEU0 232 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms