RNA–Protein interactions for RNA: ENST00000393454.6

TDP1-203, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 2,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-203ENST00000393454 CNPY3Q9BT09 278 aa9.07□□□□□ -0.96
TDP1-203ENST00000393454 TMEM106CQ9BVX2 250 aa9.07□□□□□ -0.96
TDP1-203ENST00000393454 RHOBTB2Q9BYZ6 727 aa9.07□□□□□ -0.96
TDP1-203ENST00000393454 OSBPL8Q9BZF1 889 aa9.07□□□□□ -0.96
TDP1-203ENST00000393454 SLITRK6Q9H5Y7 841 aa9.07□□□□□ -0.96
TDP1-203ENST00000393454 NRDE2Q9H7Z3 1164 aa9.07□□□□□ -0.96
TDP1-203ENST00000393454 EPB41L5Q9HCM4 733 aa9.07□□□□□ -0.96
TDP1-203ENST00000393454 PRDM5Q9NQX1 630 aaPredicted RBP9.07□□□□□ -0.96
TDP1-203ENST00000393454 DDX56Q9NY93 547 aaKnown RBP9.07□□□□□ -0.96
TDP1-203ENST00000393454 TTC3P53804 2025 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 LRRD1A4D1F6 860 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 NRP1O14786 923 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 FSCN2O14926 492 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 PHF2O75151 1096 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 GLI1P08151 1106 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 MIPP30301 263 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 IKBKEQ14164 716 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 LRRC26Q2I0M4 334 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 CCDC14Q49A88 953 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 KCNT1Q5JUK3 1230 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 SH3PXD2AQ5TCZ1 1133 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 C1orf53Q5VUE5 145 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 SCYL2Q6P3W7 929 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 FAM43BQ6ZT52 329 aaPredicted RBP9.06□□□□□ -0.96
TDP1-203ENST00000393454 CEP57Q86XR8 500 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 GSPT2Q8IYD1 628 aaKnown RBP9.06□□□□□ -0.96
TDP1-203ENST00000393454 ARFGAP1Q8N6T3 406 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 PRELID2Q8N945 189 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 ANKLE1Q8NAG6 615 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 OR10T2Q8NGX3 314 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 C1orf54Q8WWF1 131 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 NDRG1Q92597 394 aaKnown RBP9.06□□□□□ -0.96
TDP1-203ENST00000393454 HSPH1Q92598 858 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 FAM149B1Q96BN6 582 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 SMARCD1Q96GM5 515 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 TMEM209Q96SK2 561 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 KCNK16Q96T55 309 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 COLEC11Q9BWP8 271 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 NGRNQ9NPE2 291 aaKnown RBP9.06□□□□□ -0.96
TDP1-203ENST00000393454 TBX21Q9UL17 535 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 FAN1Q9Y2M0 1017 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 TSC2P49815 1807 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 ESYT3A0FGR9 886 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 ZSCAN5CA6NGD5 496 aaPredicted RBP9.06□□□□□ -0.96
TDP1-203ENST00000393454 TTI1O43156 1089 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 PRPSAP2O60256 369 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 TRUB2O95900 331 aaKnown RBP9.06□□□□□ -0.96
TDP1-203ENST00000393454 BDNFP23560 247 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 IL1R2P27930 398 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 CHRNA3P32297 505 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 RPL34P49207 117 aaKnown RBP9.06□□□□□ -0.96
TDP1-203ENST00000393454 CTCFP49711 727 aaPredicted RBP9.06□□□□□ -0.96
TDP1-203ENST00000393454 NDUFV1P49821 464 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 TKTL1P51854 596 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 DR1Q01658 176 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 SLC25A11Q02978 314 aaKnown RBP9.06□□□□□ -0.96
TDP1-203ENST00000393454 SNX1Q13596 522 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 KCTD19Q17RG1 926 aaPredicted RBP9.06□□□□□ -0.96
TDP1-203ENST00000393454 MAP9Q49MG5 647 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 EFHC1Q5JVL4 640 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 TRNP1Q6NT89 227 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 FAM171BQ6P995 826 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 MFSD7Q6UXD7 560 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 CCNI2Q6ZMN8 369 aaPredicted RBP9.06□□□□□ -0.96
TDP1-203ENST00000393454 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.06□□□□□ -0.96
TDP1-203ENST00000393454 POLNQ7Z5Q5 900 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 MTERF4Q7Z6M4 381 aaKnown RBP9.06□□□□□ -0.96
TDP1-203ENST00000393454 SPATA2LQ8IUW3 424 aaPredicted RBP9.06□□□□□ -0.96
TDP1-203ENST00000393454 CCDC105Q8IYK2 499 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 ZDHHC14Q8IZN3 488 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 KCTD6Q8NC69 237 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 FAM172AQ8WUF8 416 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 KCTD13Q8WZ19 329 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 RAPGEF5Q92565 580 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 RUBCNQ92622 972 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 KHSRPQ92945 711 aaKnown RBP eCLIP9.06□□□□□ -0.965e-6■■□□□ 14.1
TDP1-203ENST00000393454 SLITRK1Q96PX8 696 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 SMOQ99835 787 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 MRPL9Q9BYD2 267 aaKnown RBP9.06□□□□□ -0.96
TDP1-203ENST00000393454 ZNF446Q9NWS9 450 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 HCSTQ9UBK5 93 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 ADAM28Q9UKQ2 775 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 USP18Q9UMW8 372 aa9.06□□□□□ -0.96
TDP1-203ENST00000393454 KIAA0100Q14667 2235 aaKnown RBP9.06□□□□□ -0.96
TDP1-203ENST00000393454 NT5C1B-RDH14C9J2C7 533 aa9.05□□□□□ -0.96
TDP1-203ENST00000393454 TMEM189-UBE2V1I3L0A0 370 aa9.05□□□□□ -0.96
TDP1-203ENST00000393454 KRT10P13645 584 aa9.05□□□□□ -0.96
TDP1-203ENST00000393454 TNNT3P45378 269 aaPredicted RBP9.05□□□□□ -0.96
TDP1-203ENST00000393454 SLC11A1P49279 550 aa9.05□□□□□ -0.96
TDP1-203ENST00000393454 CACNA2D1P54289 1103 aa9.05□□□□□ -0.96
TDP1-203ENST00000393454 MRPS5P82675 430 aaKnown RBP9.05□□□□□ -0.96
TDP1-203ENST00000393454 MAPRE1Q15691 268 aaKnown RBP9.05□□□□□ -0.96
TDP1-203ENST00000393454 RAB6CQ53S08 254 aa9.05□□□□□ -0.96
TDP1-203ENST00000393454 FAM171A1Q5VUB5 890 aa9.05□□□□□ -0.96
TDP1-203ENST00000393454 CNKSR3Q6P9H4 555 aa9.05□□□□□ -0.96
TDP1-203ENST00000393454 CCDC137Q6PK04 289 aaKnown RBP9.05□□□□□ -0.96
TDP1-203ENST00000393454 SPOCD1Q6ZMY3 1216 aa9.05□□□□□ -0.96
TDP1-203ENST00000393454 SLC26A9Q7LBE3 791 aa9.05□□□□□ -0.96
TDP1-203ENST00000393454 NECAB2Q7Z6G3 386 aa9.05□□□□□ -0.96
TDP1-203ENST00000393454 LRRTM3Q86VH5 581 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms