RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 CCDC36Q8IYA8 594 aa8.28□□□□□ -1.08
USP48-203ENST00000374732 TCAIMQ8N3R3 496 aa8.28□□□□□ -1.08
USP48-203ENST00000374732 ZNF366Q8N895 744 aa8.28□□□□□ -1.08
USP48-203ENST00000374732 GLB1L3Q8NCI6 653 aaPredicted RBP8.28□□□□□ -1.08
USP48-203ENST00000374732 ENKURQ8TC29 256 aa8.28□□□□□ -1.08
USP48-203ENST00000374732 LENG8Q96PV6 779 aaPredicted RBP8.28□□□□□ -1.08
USP48-203ENST00000374732 TBC1D10AQ9BXI6 508 aa8.28□□□□□ -1.08
USP48-203ENST00000374732 ZCCHC2Q9C0B9 1178 aaKnown RBP8.28□□□□□ -1.08
USP48-203ENST00000374732 CARD9Q9H257 536 aa8.28□□□□□ -1.08
USP48-203ENST00000374732 XKR8Q9H6D3 395 aa8.28□□□□□ -1.08
USP48-203ENST00000374732 INTS7Q9NVH2 962 aaKnown RBP8.28□□□□□ -1.08
USP48-203ENST00000374732 REV1Q9UBZ9 1251 aa8.28□□□□□ -1.08
USP48-203ENST00000374732 CHORDC1Q9UHD1 332 aaPredicted RBP8.28□□□□□ -1.08
USP48-203ENST00000374732 ATP6V1HQ9UI12 483 aa8.28□□□□□ -1.08
USP48-203ENST00000374732 KCNH4Q9UQ05 1017 aa8.28□□□□□ -1.08
USP48-203ENST00000374732 SNX9Q9Y5X1 595 aa8.28□□□□□ -1.08
USP48-203ENST00000374732 TNKSO95271 1327 aa8.28□□□□□ -1.08
USP48-203ENST00000374732 PMS2P1A4D2B8 440 aa8.27□□□□□ -1.08
USP48-203ENST00000374732 GOLGA8OA6NCC3 632 aa8.27□□□□□ -1.08
USP48-203ENST00000374732 GOLGA8NF8WBI6 632 aa8.27□□□□□ -1.08
USP48-203ENST00000374732 GABRDO14764 452 aa8.27□□□□□ -1.08
USP48-203ENST00000374732 SYN3O14994 580 aa8.27□□□□□ -1.08
USP48-203ENST00000374732 RASSF9O75901 435 aa8.27□□□□□ -1.08
USP48-203ENST00000374732 ACAA1P09110 424 aaPredicted RBP8.27□□□□□ -1.08
USP48-203ENST00000374732 HOXA6P31267 233 aa8.27□□□□□ -1.08
USP48-203ENST00000374732 NKX2-5P52952 324 aaPredicted RBP8.27□□□□□ -1.08
USP48-203ENST00000374732 ZNF827Q17R98 1081 aa8.27□□□□□ -1.08
USP48-203ENST00000374732 LARP1Q6PKG0 1096 aaKnown RBP8.27□□□□□ -1.08
USP48-203ENST00000374732 C3orf62Q6ZUJ4 267 aa8.27□□□□□ -1.08
USP48-203ENST00000374732 PHC2Q8IXK0 858 aa8.27□□□□□ -1.08
USP48-203ENST00000374732 OR8H3Q8N146 312 aa8.27□□□□□ -1.08
USP48-203ENST00000374732 LINS1Q8NG48 757 aa8.27□□□□□ -1.08
USP48-203ENST00000374732 RAPGEF4Q8WZA2 1011 aa8.27□□□□□ -1.08
USP48-203ENST00000374732 VPS35Q96QK1 796 aa8.27□□□□□ -1.08
USP48-203ENST00000374732 EYA3Q99504 573 aa8.27□□□□□ -1.08
USP48-203ENST00000374732 RBM42Q9BTD8 480 aaKnown RBP8.27□□□□□ -1.08
USP48-203ENST00000374732 PIH1D3Q9NQM4 214 aaKnown RBP8.27□□□□□ -1.08
USP48-203ENST00000374732 OR6C2Q9NZP2 312 aa8.27□□□□□ -1.08
USP48-203ENST00000374732 SIRPGQ9P1W8 387 aa8.27□□□□□ -1.08
USP48-203ENST00000374732 GRHPRQ9UBQ7 328 aa8.27□□□□□ -1.08
USP48-203ENST00000374732 CNOT7Q9UIV1 285 aaKnown RBP8.27□□□□□ -1.08
USP48-203ENST00000374732 PSME2Q9UL46 239 aa8.27□□□□□ -1.08
USP48-203ENST00000374732 A0A0J9YVX5 310 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 SMCO2A6NFE2 343 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 SPOPO43791 374 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 SLC25A17O43808 307 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 BUB1BO60566 1050 aaPredicted RBP8.27□□□□□ -1.09
USP48-203ENST00000374732 TATP17735 454 aaPredicted RBP8.27□□□□□ -1.09
USP48-203ENST00000374732 POLR2CP19387 275 aaPredicted RBP8.27□□□□□ -1.09
USP48-203ENST00000374732 CRKLP46109 303 aaKnown RBP8.27□□□□□ -1.09
USP48-203ENST00000374732 AK2P54819 239 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 MFAP3P55082 362 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 RNF4P78317 190 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 KCNJ10P78508 379 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 NRG1Q02297 640 aaPredicted RBP8.27□□□□□ -1.09
USP48-203ENST00000374732 STRN3Q13033 797 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 PFKFB3Q16875 520 aaPredicted RBP8.27□□□□□ -1.09
USP48-203ENST00000374732 KCNT1Q5JUK3 1230 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 IL23RQ5VWK5 629 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 DNAAF3Q8N9W5 541 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 FBXO22Q8NEZ5 403 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 IFI44Q8TCB0 444 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 GRIN3AQ8TCU5 1115 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 RHPN1Q8TCX5 695 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 TRPM4Q8TD43 1214 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 ASB12Q8WXK4 309 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 DNAJC1Q96KC8 554 aaKnown RBP8.27□□□□□ -1.09
USP48-203ENST00000374732 PPP1R10Q96QC0 940 aaKnown RBP8.27□□□□□ -1.09
USP48-203ENST00000374732 MRPL1Q9BYD6 325 aaKnown RBP8.27□□□□□ -1.09
USP48-203ENST00000374732 EPS8L2Q9H6S3 715 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 SLC52A2Q9HAB3 445 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 SARS2Q9NP81 518 aaKnown RBP8.27□□□□□ -1.09
USP48-203ENST00000374732 AAASQ9NRG9 546 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 POLR3BQ9NW08 1133 aaPredicted RBP8.27□□□□□ -1.09
USP48-203ENST00000374732 AASSQ9UDR5 926 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 ENOPH1Q9UHY7 261 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 GGT7Q9UJ14 662 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 GGA2Q9UJY4 613 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 PCDHGB4Q9UN71 923 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 DNMT3AQ9Y6K1 912 aaPredicted RBP8.27□□□□□ -1.09
USP48-203ENST00000374732 KDM6AO15550 1401 aaPredicted RBP8.27□□□□□ -1.09
USP48-203ENST00000374732 AK9Q5TCS8 1911 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 ATP8B3O60423 1300 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 GCOM1H8Y6P7 765 aaPredicted RBP8.27□□□□□ -1.09
USP48-203ENST00000374732 NPC1O15118 1278 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 CIDEAO60543 219 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 SERPINB7O75635 380 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 ABLIM3O94929 683 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 ADAMTS2O95450 1211 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 POU2F2P09086 479 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 QDPRP09417 244 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 PRKAR1AP10644 381 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 ANPEPP15144 967 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 PHKG2P15735 406 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 TLX1P31314 330 aaPredicted RBP8.27□□□□□ -1.09
USP48-203ENST00000374732 IARSP41252 1262 aaKnown RBP8.27□□□□□ -1.09
USP48-203ENST00000374732 ZNF33BQ06732 778 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 RAPSNQ13702 412 aa8.27□□□□□ -1.09
USP48-203ENST00000374732 LASP1Q14847 261 aaKnown RBP8.27□□□□□ -1.09
USP48-203ENST00000374732 TMEM259Q4ZIN3 620 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms