RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 GPR65Q8IYL9 337 aa20.93■□□□□ 0.94
CLN3-205ENST00000359984 TTC9BQ8N6N2 239 aa20.93■□□□□ 0.94
CLN3-205ENST00000359984 CLEC4CQ8WTT0 213 aa20.93■□□□□ 0.94
CLN3-205ENST00000359984 METTL5Q9NRN9 209 aaKnown RBP20.93■□□□□ 0.94
CLN3-205ENST00000359984 PCDHA11Q9Y5I1 949 aa20.93■□□□□ 0.94
CLN3-205ENST00000359984 MYH10P35580 1976 aa20.93■□□□□ 0.94
CLN3-205ENST00000359984 PTPRDP23468 1912 aa20.93■□□□□ 0.94
CLN3-205ENST00000359984 NDUFV1P49821 464 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 TKTL1P51854 596 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 DCUN1D2Q6PH85 259 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 ZDHHC17Q8IUH5 632 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 SCN4BQ8IWT1 228 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 KIF18AQ8NI77 898 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 JOSD2Q8TAC2 188 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 SPPL2BQ8TCT7 592 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 C2orf15Q8WU43 125 aaKnown RBP20.92■□□□□ 0.94
CLN3-205ENST00000359984 KHSRPQ92945 711 aaKnown RBP eCLIP20.92■□□□□ 0.94
CLN3-205ENST00000359984 NAPGQ99747 312 aaPredicted RBP20.92■□□□□ 0.94
CLN3-205ENST00000359984 CRISPLD1Q9H336 500 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 ALG13Q9NP73 1137 aaKnown RBP20.92■□□□□ 0.94
CLN3-205ENST00000359984 PNPLA8Q9NP80 782 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 SLC27A5Q9Y2P5 690 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 YBX2Q9Y2T7 364 aaKnown RBP20.92■□□□□ 0.94
CLN3-205ENST00000359984 JRKLQ9Y4A0 524 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 TMEM110-MUSTN1A8MSY1 372 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 MYO1FO00160 1098 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 ENC1O14682 589 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 RFC1P35251 1148 aaPredicted RBP20.92■□□□□ 0.94
CLN3-205ENST00000359984 ADCY1Q08828 1119 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 TAF5Q15542 800 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 C11orf63Q6NUN7 778 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 SYCE1Q8N0S2 351 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 SIX6OS1Q8N1H7 587 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 TMEM59LQ9UK28 342 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 LZTS1Q9Y250 596 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 HYOU1Q9Y4L1 999 aa20.92■□□□□ 0.94
CLN3-205ENST00000359984 CTAGE9A4FU28 777 aa20.91■□□□□ 0.94
CLN3-205ENST00000359984 C5orf67F2Z3F1 127 aa20.91■□□□□ 0.94
CLN3-205ENST00000359984 PBX2P40425 430 aa20.91■□□□□ 0.94
CLN3-205ENST00000359984 DUSP4Q13115 394 aa20.91■□□□□ 0.94
CLN3-205ENST00000359984 PTPROQ16827 1216 aa20.91■□□□□ 0.94
CLN3-205ENST00000359984 SPPL3Q8TCT6 385 aa20.91■□□□□ 0.94
CLN3-205ENST00000359984 NDRG1Q92597 394 aaKnown RBP20.91■□□□□ 0.94
CLN3-205ENST00000359984 C8orf48Q96LL4 319 aa20.91■□□□□ 0.94
CLN3-205ENST00000359984 ULBP1Q9BZM6 244 aa20.91■□□□□ 0.94
CLN3-205ENST00000359984 RXFP1Q9HBX9 757 aa20.91■□□□□ 0.94
CLN3-205ENST00000359984 FNIP2Q9P278 1114 aa20.91■□□□□ 0.94
CLN3-205ENST00000359984 MTUS1Q9ULD2 1270 aa20.91■□□□□ 0.94
CLN3-205ENST00000359984 ALG6Q9Y672 507 aa20.91■□□□□ 0.94
CLN3-205ENST00000359984 NCK2O43639 380 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 ABLIM3O94929 683 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 ATP1A1P05023 1023 aaKnown RBP20.9■□□□□ 0.94
CLN3-205ENST00000359984 GPR15P49685 360 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 RNASE9P60153 205 aaKnown RBP20.9■□□□□ 0.94
CLN3-205ENST00000359984 OGDHQ02218 1023 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 DDR2Q16832 855 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 MEI1Q5TIA1 1274 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 NT5DC3Q86UY8 548 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 CPNE8Q86YQ8 564 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 EMC1Q8N766 993 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 MYRIPQ8NFW9 859 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 UBE2Q2Q8WVN8 375 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.9■□□□□ 0.94
CLN3-205ENST00000359984 AFF4Q9UHB7 1163 aaKnown RBP20.9■□□□□ 0.94
CLN3-205ENST00000359984 SSX2IPQ9Y2D8 614 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 TNFRSF10BO14763 440 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 TRIM66O15016 1216 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 GRAP2O75791 330 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 SOAT2O75908 522 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 CXCL14O95715 111 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 RB1P06400 928 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 HAPLN1P10915 354 aaPredicted RBP20.9■□□□□ 0.94
CLN3-205ENST00000359984 DNAJB1P25685 340 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 SCNN1AP37088 669 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 MRPS5P82675 430 aaKnown RBP20.9■□□□□ 0.94
CLN3-205ENST00000359984 ZNF252P-AS1Q0IIN9 211 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 RAB33AQ14088 237 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 SDHAF4Q5VUM1 108 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 SLC26A9Q7LBE3 791 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 TMC7Q7Z402 723 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 PEX26Q7Z412 305 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 ZNF461Q8TAF7 563 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 TLR10Q9BXR5 811 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 IP6K2Q9UHH9 426 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 PLXNA4Q9HCM2 1894 aa20.9■□□□□ 0.94
CLN3-205ENST00000359984 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.89■□□□□ 0.93
CLN3-205ENST00000359984 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.89■□□□□ 0.93
CLN3-205ENST00000359984 TEX28O15482 410 aa20.89■□□□□ 0.93
CLN3-205ENST00000359984 PROSCO94903 275 aa20.89■□□□□ 0.93
CLN3-205ENST00000359984 FBXO21O94952 628 aa20.89■□□□□ 0.93
CLN3-205ENST00000359984 COMTP21964 271 aa20.89■□□□□ 0.93
CLN3-205ENST00000359984 ERVFC1P60507 584 aa20.89■□□□□ 0.93
CLN3-205ENST00000359984 MGAT5BQ3V5L5 792 aa20.89■□□□□ 0.93
CLN3-205ENST00000359984 TPGS2Q68CL5 300 aa20.89■□□□□ 0.93
CLN3-205ENST00000359984 TRNP1Q6NT89 227 aa20.89■□□□□ 0.93
CLN3-205ENST00000359984 SCAMP5Q8TAC9 235 aa20.89■□□□□ 0.93
CLN3-205ENST00000359984 POF1BQ8WVV4 589 aa20.89■□□□□ 0.93
CLN3-205ENST00000359984 TGS1Q96RS0 853 aaKnown RBP20.89■□□□□ 0.93
CLN3-205ENST00000359984 SEPT5Q99719 369 aaPredicted RBP20.89■□□□□ 0.93
CLN3-205ENST00000359984 CNGB3Q9NQW8 809 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms