RNA–Protein interactions for RNA: ENST00000354757.4

PCDHB11-201, Transcript of protocadherin beta 11, humanhuman

APPRIS P1 BASIC

Gene PCDHB11, Length 4,198 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11-201ENST00000354757 KIRREL3Q8IZU9 778 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 EFHBQ8N7U6 833 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 ATP11CQ8NB49 1132 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 CALR3Q96L12 384 aaKnown RBP12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 NUDCD1Q96RS6 583 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 CHST7Q9NS84 486 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 KCNK1O00180 336 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 COPEO14579 308 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 MEFVO15553 781 aaPredicted RBP12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 CKMP06732 381 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 RARAP10276 462 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 DARSP14868 501 aaKnown RBP12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 ALDH1A3P47895 512 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 PRAMEP78395 509 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 SLC12A1Q13621 1099 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 RPS6KA2Q15349 733 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 RNF219Q5W0B1 726 aaPredicted RBP12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 HGSNATQ68CP4 663 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 TFAP2DQ7Z6R9 452 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 IFNL1Q8IU54 200 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 MAML1Q92585 1016 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 CYP4F11Q9HBI6 524 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 KLC4Q9NSK0 619 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 FAM105AQ9NUU6 356 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 ZC3H7BQ9UGR2 993 aaKnown RBP12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 GGT7Q9UJ14 662 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 DCTN4Q9UJW0 460 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 UBA6A0AVT1 1052 aaPredicted RBP12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 MIPP30301 263 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 RTP1P59025 263 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 C1QBPQ07021 282 aaKnown RBP12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 BTG3Q14201 252 aaPredicted RBP12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 SLC39A12Q504Y0 691 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 FAM182AQ5T1J6 154 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 C3orf62Q6ZUJ4 267 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 ATPAF2Q8N5M1 289 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 ALKBH8Q96BT7 664 aaKnown RBP12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 MFSD14AQ96MC6 490 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 NIFKQ9BYG3 293 aaKnown RBP12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 ULBP1Q9BZM6 244 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 KCND1Q9NSA2 647 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 TRMT13Q9NUP7 481 aaKnown RBP12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 UBR2Q8IWV8 1755 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 ZSCAN5DPP0CG00 497 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 GRK4P32298 578 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 RECQLP46063 649 aaPredicted RBP12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 CTCFP49711 727 aaPredicted RBP12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 ARHGAP1Q07960 439 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 SPOCD1Q6ZMY3 1216 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 C1orf127Q8N9H9 656 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 GIPC2Q8TF65 315 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 HDAC11Q96DB2 347 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 ZFATQ9P243 1243 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 KIAA1257Q9ULG3 409 aa12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 TPX2Q9ULW0 747 aaKnown RBP12.87□□□□□ -0.35
PCDHB11-201ENST00000354757 A0A0G2JND7 137 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 IQANK1A0A1B0GTG1 560 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 PCK1P35558 622 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 TMPRSS15P98073 1019 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 BIRC2Q13490 618 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 NDRG1Q92597 394 aaKnown RBP12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 ATP6V1E2Q96A05 226 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 ATP6V1G3Q96LB4 118 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 CPSF2Q9P2I0 782 aaKnown RBP12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 IPPQ9Y573 584 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 SLX4Q8IY92 1834 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 NEMP1O14524 444 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 ZFXP17010 805 aaPredicted RBP12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 RABGGTBP53611 331 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 OLFML2BQ68BL8 750 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 ZNF449Q6P9G9 518 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 DPF3Q92784 378 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 R3HDMLQ9H3Y0 253 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 VIPAS39Q9H9C1 493 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 PIAS1O75925 651 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 FAM153BP0C7A2 387 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 SKIP12755 728 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 WEE1P30291 646 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 YWHAZP63104 245 aaKnown RBP12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 COG7P83436 770 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 FAM153CQ494X1 144 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 DENND5BQ6ZUT9 1274 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 SLFN11Q7Z7L1 901 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 PIGZQ86VD9 579 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 MRPL45Q9BRJ2 306 aaKnown RBP12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 ZNF518BQ9C0D4 1074 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 FAM153AQ9UHL3 310 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 PADI3Q9ULW8 664 aa12.86□□□□□ -0.35
PCDHB11-201ENST00000354757 CEP290O15078 2479 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 SMIM28A0A1B0GU29 152 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 SLC12A8A0AV02 714 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 IGF2BP3O00425 579 aaKnown RBP eCLIP12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 FKTNO75072 461 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 LSM8O95777 96 aaKnown RBP12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 OR4Q2P0C623 313 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 ITIH2P19823 946 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 AMPD1P23109 780 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 SLC8A1P32418 973 aa12.85□□□□□ -0.35
PCDHB11-201ENST00000354757 HOXD13P35453 343 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms