RNA–Protein interactions for RNA: ENST00000336180.6

LIMK1-201, Transcript of LIM domain kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMK1, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-201ENST00000336180 TJP3O95049 919 aa13.19□□□□□ -0.3
LIMK1-201ENST00000336180 PAEPP09466 180 aa13.19□□□□□ -0.3
LIMK1-201ENST00000336180 SCNN1GP51170 649 aa13.19□□□□□ -0.3
LIMK1-201ENST00000336180 HTRA3P83110 453 aa13.19□□□□□ -0.3
LIMK1-201ENST00000336180 CCNG2Q16589 344 aa13.19□□□□□ -0.3
LIMK1-201ENST00000336180 RBM41Q96IZ5 413 aaKnown RBP13.19□□□□□ -0.3
LIMK1-201ENST00000336180 SNX25Q9H3E2 840 aa13.19□□□□□ -0.3
LIMK1-201ENST00000336180 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.19□□□□□ -0.3
LIMK1-201ENST00000336180 MANSC4A6NHS7 340 aaPredicted RBP13.18□□□□□ -0.3
LIMK1-201ENST00000336180 C3orf70A6NLC5 250 aaPredicted RBP13.18□□□□□ -0.3
LIMK1-201ENST00000336180 PTGESO14684 152 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 YY1P25490 414 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 CD52P31358 61 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 CETN2P41208 172 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 CCDC14Q49A88 953 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 C12orf50Q8NA57 414 aaPredicted RBP13.18□□□□□ -0.3
LIMK1-201ENST00000336180 RBM15Q96T37 977 aaKnown RBP eCLIP13.18□□□□□ -0.3
LIMK1-201ENST00000336180 APBA2Q99767 749 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 TRMT13Q9NUP7 481 aaKnown RBP13.18□□□□□ -0.3
LIMK1-201ENST00000336180 NINJ2Q9NZG7 142 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 HESX1Q9UBX0 185 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 STRIP2Q9ULQ0 834 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 MBLAC1A4D2B0 266 aaPredicted RBP13.18□□□□□ -0.3
LIMK1-201ENST00000336180 RASGRF2O14827 1237 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 GPD1P21695 349 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 CDH5P33151 784 aaPredicted RBP13.18□□□□□ -0.3
LIMK1-201ENST00000336180 BASP1P80723 227 aaKnown RBP13.18□□□□□ -0.3
LIMK1-201ENST00000336180 PTK6Q13882 451 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 KRT81Q14533 505 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 EFTUD2Q15029 972 aaKnown RBP eCLIP13.18□□□□□ -0.33e-6■■■■■ 41.9
LIMK1-201ENST00000336180 PPP2R5EQ16537 467 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 DCAF4L1Q3SXM0 396 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 FAM131BQ86XD5 332 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 TRIM56Q9BRZ2 755 aaKnown RBP13.18□□□□□ -0.3
LIMK1-201ENST00000336180 MED10Q9BTT4 135 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 CXorf56Q9H5V9 222 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 KCNK9Q9NPC2 374 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 PSD3Q9NYI0 1048 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 RPS6KA5O75582 802 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 HOXD8P13378 290 aaPredicted RBP13.18□□□□□ -0.3
LIMK1-201ENST00000336180 ATICP31939 592 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 POU5F1BQ06416 359 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 QPCTQ16769 361 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 HADHQ16836 314 aaKnown RBP13.18□□□□□ -0.3
LIMK1-201ENST00000336180 C10orf67Q8IYJ2 551 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 C3orf58Q8NDZ4 430 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 GDAP1Q8TB36 358 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 ZNF518BQ9C0D4 1074 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 LHX5Q9H2C1 402 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 ADAM7Q9H2U9 754 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 VPS37BQ9H9H4 285 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 KIF9Q9HAQ2 790 aa13.18□□□□□ -0.3
LIMK1-201ENST00000336180 HMGB1P1B2RPK0 211 aaPredicted RBP13.17□□□□□ -0.3
LIMK1-201ENST00000336180 H7C0C1 242 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 AVILO75366 819 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 TRUB2O95900 331 aaKnown RBP13.17□□□□□ -0.3
LIMK1-201ENST00000336180 MDH1P40925 334 aaKnown RBP13.17□□□□□ -0.3
LIMK1-201ENST00000336180 ATP5OP48047 213 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 CLCNKBP51801 687 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 ADAM17P78536 824 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 ZBED8Q8IZ13 594 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 ADGRF2Q8IZF7 708 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 SPATA18Q8TC71 538 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 THOC1Q96FV9 657 aaKnown RBP13.17□□□□□ -0.3
LIMK1-201ENST00000336180 KCNK16Q96T55 309 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 DHX35Q9H5Z1 703 aaKnown RBP13.17□□□□□ -0.3
LIMK1-201ENST00000336180 PRPSAP2O60256 369 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 CHRNA1P02708 482 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 HMGCRP04035 888 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 AKR1A1P14550 325 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 CHN1P15882 459 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 EIF3EP60228 445 aaKnown RBP13.17□□□□□ -0.3
LIMK1-201ENST00000336180 PPP2R2AP63151 447 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 MDH1BQ5I0G3 518 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 KIAA0319Q5VV43 1072 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 LCLAT1Q6UWP7 414 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 KDM7AQ6ZMT4 941 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 MAK16Q9BXY0 300 aaKnown RBP13.17□□□□□ -0.3
LIMK1-201ENST00000336180 CYP3A43Q9HB55 503 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 C2CD4BA6NLJ0 364 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 CYB561D2O14569 222 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 RBP3P10745 1247 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 KLRC2P26717 231 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 CACNA2D1P54289 1103 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 MAP3K7CLP57077 242 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 LILRA4P59901 499 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 ADIGQ0VDE8 80 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 NME3Q13232 169 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 ZBTB6Q15916 424 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 MSS51Q4VC12 460 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 LRIG3Q6UXM1 1119 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 HFE2Q6ZVN8 426 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 CD302Q8IX05 232 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 CCDC89Q8N998 374 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 APPL2Q8NEU8 664 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.17□□□□□ -0.3
LIMK1-201ENST00000336180 RSAD2Q8WXG1 361 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 USP6NLQ92738 828 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 MCRS1Q96EZ8 462 aa13.17□□□□□ -0.3
LIMK1-201ENST00000336180 PAIP2Q9BPZ3 127 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms