RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W NAT5Q08689 176 aa3.12□□□□□ -1.91
PRP40YKL012W FPR1P20081 114 aaKnown RBP3.11□□□□□ -1.91
PRP40YKL012W TRS20P38334 175 aa3.11□□□□□ -1.91
PRP40YKL012W YDL157CQ12082 118 aa3.11□□□□□ -1.91
PRP40YKL012W COX5BP00425 151 aa3.1□□□□□ -1.91
PRP40YKL012W SRP21P32342 167 aa3.1□□□□□ -1.91
PRP40YKL012W GSP1P32835 219 aaKnown RBP3.1□□□□□ -1.91
PRP40YKL012W SHB17P36136 271 aaKnown RBP3.1□□□□□ -1.91
PRP40YKL012W CSF1Q12150 2958 aa3.1□□□□□ -1.91
PRP40YKL012W PAU5P43575 122 aa3.1□□□□□ -1.91
PRP40YKL012W BRR2P32639 2163 aaKnown RBP3.09□□□□□ -1.91
PRP40YKL012W SUA7P29055 345 aaPredicted RBP3.09□□□□□ -1.91
PRP40YKL012W YHL042WP38729 150 aa3.09□□□□□ -1.91
PRP40YKL012W YEA6P39953 335 aa3.09□□□□□ -1.91
PRP40YKL012W PHS1P40857 217 aa3.09□□□□□ -1.91
PRP40YKL012W RPL14AP36105 138 aaKnown RBP3.08□□□□□ -1.92
PRP40YKL012W RPL14BP38754 138 aaKnown RBP3.08□□□□□ -1.92
PRP40YKL012W UBC7Q02159 165 aa3.08□□□□□ -1.92
PRP40YKL012W NHP6AP11632 93 aaKnown RBP3.07□□□□□ -1.92
PRP40YKL012W AHT1P29589 182 aa3.07□□□□□ -1.92
PRP40YKL012W YBR292CP38357 123 aa3.07□□□□□ -1.92
PRP40YKL012W YEL008WP40001 126 aa3.07□□□□□ -1.92
PRP40YKL012W YGR017WP53210 297 aa3.07□□□□□ -1.92
PRP40YKL012W YLR361C-AQ3E795 98 aa3.07□□□□□ -1.92
PRP40YKL012W SCS22Q6Q595 175 aa3.07□□□□□ -1.92
PRP40YKL012W BEM2P39960 2167 aaKnown RBP3.07□□□□□ -1.92
PRP40YKL012W HSP10P38910 106 aa3.07□□□□□ -1.92
PRP40YKL012W PAU23Q07987 124 aa3.07□□□□□ -1.92
PRP40YKL012W PAU17Q12370 124 aa3.07□□□□□ -1.92
PRP40YKL012W PAU4P53427 120 aa3.06□□□□□ -1.92
PRP40YKL012W PAU1P0CE88 120 aa3.05□□□□□ -1.92
PRP40YKL012W PAU14P0CE89 120 aa3.05□□□□□ -1.92
PRP40YKL012W PAU6P0CE90 120 aa3.05□□□□□ -1.92
PRP40YKL012W PAU18P0CE91 120 aa3.05□□□□□ -1.92
PRP40YKL012W PAU8P0CE92 120 aa3.05□□□□□ -1.92
PRP40YKL012W PAU11P0CE93 120 aa3.05□□□□□ -1.92
PRP40YKL012W PAU13P38725 120 aa3.05□□□□□ -1.92
PRP40YKL012W ATP19P81451 68 aa3.05□□□□□ -1.92
PRP40YKL012W PAU10Q03050 120 aa3.05□□□□□ -1.92
PRP40YKL012W PAU20Q08322 120 aa3.05□□□□□ -1.92
PRP40YKL012W PAU9Q3E770 120 aa3.05□□□□□ -1.92
PRP40YKL012W SLO1Q3E784 85 aa3.05□□□□□ -1.92
PRP40YKL012W TIM12P32830 109 aa3.05□□□□□ -1.92
PRP40YKL012W LSM2P38203 95 aaKnown RBP3.05□□□□□ -1.92
PRP40YKL012W APS2Q00381 147 aa3.05□□□□□ -1.92
PRP40YKL012W HUT1Q12520 339 aa3.05□□□□□ -1.92
PRP40YKL012W Q0144Q9ZZW2 109 aa3.05□□□□□ -1.92
PRP40YKL012W POL2P21951 2222 aaKnown RBP3.04□□□□□ -1.92
PRP40YKL012W ANB1P19211 157 aa3.04□□□□□ -1.92
PRP40YKL012W YMR082CQ04276 118 aa3.04□□□□□ -1.92
PRP40YKL012W YDR034W-BQ6Q5X2 51 aa3.04□□□□□ -1.92
PRP40YKL012W PAU16P35994 123 aa3.03□□□□□ -1.92
PRP40YKL012W YHR140WP38842 239 aa3.03□□□□□ -1.92
PRP40YKL012W CNL1Q06333 122 aa3.03□□□□□ -1.92
PRP40YKL012W IRC19Q07843 230 aa3.03□□□□□ -1.92
PRP40YKL012W WIP1Q2V2P8 89 aa3.03□□□□□ -1.92
PRP40YKL012W TAR1Q8TGM6 124 aa3.03□□□□□ -1.92
PRP40YKL012W IRA1P18963 3092 aa3.03□□□□□ -1.92
PRP40YKL012W SEC16P48415 2195 aaKnown RBP3.03□□□□□ -1.92
PRP40YKL012W FMP49A0A023PZB3 126 aa3.02□□□□□ -1.93
PRP40YKL012W RPB11P38902 120 aa3.02□□□□□ -1.93
PRP40YKL012W YFL065CP43539 102 aa3.02□□□□□ -1.93
PRP40YKL012W COA2Q3E823 68 aa3.02□□□□□ -1.93
PRP40YKL012W FMP27Q06179 2628 aa3.02□□□□□ -1.93
PRP40YKL012W IRA2P19158 3079 aa3.02□□□□□ -1.93
PRP40YKL012W PAI3P01094 68 aa3.02□□□□□ -1.93
PRP40YKL012W CDC39P25655 2108 aaKnown RBP3.02□□□□□ -1.93
PRP40YKL012W YMR090WQ04304 227 aaKnown RBP3.02□□□□□ -1.93
PRP40YKL012W HFA1P32874 2273 aa3.01□□□□□ -1.93
PRP40YKL012W RPS27AP35997 82 aaKnown RBP3.01□□□□□ -1.93
PRP40YKL012W RPS27BP38711 82 aa3.01□□□□□ -1.93
PRP40YKL012W DYN2Q02647 92 aa3.01□□□□□ -1.93
PRP40YKL012W NCE101Q02820 53 aa3.01□□□□□ -1.93
PRP40YKL012W ACC1Q00955 2233 aaKnown RBP3.01□□□□□ -1.93
PRP40YKL012W YPR117WQ06116 2489 aa3.01□□□□□ -1.93
PRP40YKL012W BLM10P43583 2143 aa3□□□□□ -1.93
PRP40YKL012W MRP49P32388 137 aa3□□□□□ -1.93
PRP40YKL012W SNU13P39990 126 aaKnown RBP3□□□□□ -1.93
PRP40YKL012W YGL230CP53074 147 aa3□□□□□ -1.93
PRP40YKL012W COA3Q3E7B2 85 aa3□□□□□ -1.93
PRP40YKL012W YOR304C-AO14468 76 aa2.99□□□□□ -1.93
PRP40YKL012W MSL1P40567 111 aaPredicted RBP2.99□□□□□ -1.93
PRP40YKL012W YOR105WQ08504 108 aa2.99□□□□□ -1.93
PRP40YKL012W YOR343CQ12484 108 aa2.99□□□□□ -1.93
PRP40YKL012W YLR363W-AQ3E747 85 aa2.99□□□□□ -1.93
PRP40YKL012W YCL042WP25572 119 aa2.98□□□□□ -1.93
PRP40YKL012W SRX1P36077 127 aa2.98□□□□□ -1.93
PRP40YKL012W YKR070WP36151 352 aaKnown RBP2.98□□□□□ -1.93
PRP40YKL012W YNL198CP40166 100 aa2.98□□□□□ -1.93
PRP40YKL012W ELC1Q03071 99 aa2.98□□□□□ -1.93
PRP40YKL012W FCY1Q12178 158 aa2.98□□□□□ -1.93
PRP40YKL012W CMC4Q3E7A9 73 aa2.98□□□□□ -1.93
PRP40YKL012W RPS22AP0C0W1 130 aaKnown RBP2.97□□□□□ -1.93
PRP40YKL012W HSP150P32478 413 aa2.97□□□□□ -1.93
PRP40YKL012W YCR075W-AQ3E830 75 aa2.97□□□□□ -1.93
PRP40YKL012W QCR9P22289 66 aa2.97□□□□□ -1.93
PRP40YKL012W YEL014CP39999 101 aa2.97□□□□□ -1.93
PRP40YKL012W YIL086CP40503 102 aa2.97□□□□□ -1.93
PRP40YKL012W YIL046W-AQ3E7Z4 54 aa2.97□□□□□ -1.93
PRP40YKL012W YOS1Q3E834 85 aa2.97□□□□□ -1.93
Retrieved 100 of 5,963 RNA–protein pairs in 25.6 ms