RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 SLC9A4Q6AI14 798 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 KIRREL2Q6UWL6 708 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 DPY19L3Q6ZPD9 716 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 OVCH2Q7RTZ1 564 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 DAAM2Q86T65 1068 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 IZUMO1Q8IYV9 350 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 ZNF366Q8N895 744 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 OSCP1Q8WVF1 389 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 MAML1Q92585 1016 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 C5orf34Q96MH7 638 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 ASB2Q96Q27 587 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 CDH19Q9H159 772 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 WDR26Q9H7D7 661 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 NMRK2Q9NPI5 230 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 PDGFCQ9NRA1 345 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 CNNM1Q9NRU3 951 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 TBC1D30Q9Y2I9 924 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 H7C1Q1 480 aa5.22□□□□□ -1.57
CD44-239ENST00000639002 RFPL1O75677 317 aa5.22□□□□□ -1.57
CD44-239ENST00000639002 TUSC2O75896 110 aa5.22□□□□□ -1.57
CD44-239ENST00000639002 TOP3BO95985 862 aaKnown RBP5.22□□□□□ -1.57
CD44-239ENST00000639002 CT47B1P0C2W7 299 aaPredicted RBP5.22□□□□□ -1.57
CD44-239ENST00000639002 HSPA6P17066 643 aa5.22□□□□□ -1.57
CD44-239ENST00000639002 FPR3P25089 353 aa5.22□□□□□ -1.57
CD44-239ENST00000639002 TPTEP56180 551 aa5.22□□□□□ -1.57
CD44-239ENST00000639002 GPSM2P81274 684 aa5.22□□□□□ -1.57
CD44-239ENST00000639002 PLA1AQ53H76 456 aa5.22□□□□□ -1.57
CD44-239ENST00000639002 L1TD1Q5T7N2 865 aaKnown RBP5.22□□□□□ -1.57
CD44-239ENST00000639002 LMBRD2Q68DH5 695 aaPredicted RBP5.22□□□□□ -1.57
CD44-239ENST00000639002 SWSAP1Q6NVH7 229 aa5.22□□□□□ -1.57
CD44-239ENST00000639002 CAND1Q86VP6 1230 aaKnown RBP5.22□□□□□ -1.57
CD44-239ENST00000639002 GALNT16Q8N428 558 aa5.22□□□□□ -1.57
CD44-239ENST00000639002 TERB1Q8NA31 727 aa5.22□□□□□ -1.57
CD44-239ENST00000639002 ZBTB34Q8NCN2 500 aa5.22□□□□□ -1.57
CD44-239ENST00000639002 ABHD11Q8NFV4 315 aa5.22□□□□□ -1.57
CD44-239ENST00000639002 BPIFB1Q8TDL5 484 aa5.22□□□□□ -1.57
CD44-239ENST00000639002 TMEM171Q8WVE6 324 aa5.22□□□□□ -1.57
CD44-239ENST00000639002 ZC3H10Q96K80 434 aaKnown RBP5.22□□□□□ -1.57
CD44-239ENST00000639002 PRR25Q96S07 402 aa5.22□□□□□ -1.57
CD44-239ENST00000639002 SPRTNQ9H040 489 aaPredicted RBP5.22□□□□□ -1.57
CD44-239ENST00000639002 CYP2D7A0A087X1C5 515 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 E2F8A0AVK6 867 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 MYO1CO00159 1063 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 AP4M1O00189 453 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 EXOC3O60645 756 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 XRCC6P12956 609 aaKnown RBP eCLIP5.21□□□□□ -1.58
CD44-239ENST00000639002 ITGB6P18564 788 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 PSG6Q00889 435 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 E2F1Q01094 437 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 KRT17Q04695 432 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 GTF2H3Q13889 308 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 MGAT5BQ3V5L5 792 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 ZDHHC24Q6UX98 284 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 NPNTQ6UXI9 565 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 ZNF783Q6ZMS7 281 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 RAVER1Q8IY67 606 aaKnown RBP5.21□□□□□ -1.58
CD44-239ENST00000639002 IL31RAQ8NI17 732 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 RAPGEF4Q8WZA2 1011 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 PPP2R3CQ969Q6 453 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 DAZAP1Q96EP5 407 aaKnown RBP5.21□□□□□ -1.58
CD44-239ENST00000639002 PUS7Q96PZ0 661 aaKnown RBP5.21□□□□□ -1.58
CD44-239ENST00000639002 SNX18Q96RF0 628 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 C17orf80Q9BSJ5 609 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 PRSS22Q9GZN4 317 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 MS4A7Q9GZW8 240 aaPredicted RBP5.21□□□□□ -1.58
CD44-239ENST00000639002 GBA2Q9HCG7 927 aaPredicted RBP5.21□□□□□ -1.58
CD44-239ENST00000639002 NRIP3Q9NQ35 241 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 ASIC5Q9NY37 505 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 CCNL1Q9UK58 526 aaPredicted RBP5.21□□□□□ -1.58
CD44-239ENST00000639002 CACNA1IQ9P0X4 2223 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 USP19O94966 1318 aa5.21□□□□□ -1.58
CD44-239ENST00000639002 hCG_2014768A0A024R1R8 64 aa5.2□□□□□ -1.58
CD44-239ENST00000639002 A0A1W2PPL8 197 aa5.2□□□□□ -1.58
CD44-239ENST00000639002 POC1B-GALNT4F8VUJ3 575 aa5.2□□□□□ -1.58
CD44-239ENST00000639002 CYP2A6P11509 494 aaPredicted RBP5.2□□□□□ -1.58
CD44-239ENST00000639002 RENBPP51606 427 aa5.2□□□□□ -1.58
CD44-239ENST00000639002 ALDH5A1P51649 535 aaPredicted RBP5.2□□□□□ -1.58
CD44-239ENST00000639002 ANO6Q4KMQ2 910 aa5.2□□□□□ -1.58
CD44-239ENST00000639002 MTHFD1LQ6UB35 978 aa5.2□□□□□ -1.58
CD44-239ENST00000639002 GALNT4Q8N4A0 578 aa5.2□□□□□ -1.58
CD44-239ENST00000639002 OR6B3Q8NGW1 331 aa5.2□□□□□ -1.58
CD44-239ENST00000639002 ZBTB9Q96C00 473 aa5.2□□□□□ -1.58
CD44-239ENST00000639002 B3GNT5Q9BYG0 378 aa5.2□□□□□ -1.58
CD44-239ENST00000639002 THRAP3Q9Y2W1 955 aaKnown RBP5.2□□□□□ -1.58
CD44-239ENST00000639002 ZNF521Q96K83 1311 aa5.2□□□□□ -1.58
CD44-239ENST00000639002 KCNU1A8MYU2 1149 aa5.19□□□□□ -1.58
CD44-239ENST00000639002 TBX3O15119 743 aa5.19□□□□□ -1.58
CD44-239ENST00000639002 PRPF3O43395 683 aaKnown RBP5.19□□□□□ -1.58
CD44-239ENST00000639002 BCAR3O75815 825 aa5.19□□□□□ -1.58
CD44-239ENST00000639002 PRKCBP05771 671 aa5.19□□□□□ -1.58
CD44-239ENST00000639002 DLDP09622 509 aaKnown RBP5.19□□□□□ -1.58
CD44-239ENST00000639002 EN2P19622 333 aaPredicted RBP5.19□□□□□ -1.58
CD44-239ENST00000639002 ARHGAP25P42331 645 aa5.19□□□□□ -1.58
CD44-239ENST00000639002 SLC13A2Q13183 592 aa5.19□□□□□ -1.58
CD44-239ENST00000639002 DCAF12L1Q5VU92 463 aa5.19□□□□□ -1.58
CD44-239ENST00000639002 BCDIN3DQ7Z5W3 292 aaKnown RBP5.19□□□□□ -1.58
CD44-239ENST00000639002 MICU3Q86XE3 530 aa5.19□□□□□ -1.58
CD44-239ENST00000639002 OR56A3Q8NH54 315 aa5.19□□□□□ -1.58
CD44-239ENST00000639002 RUNDC1Q96C34 613 aa5.19□□□□□ -1.58
CD44-239ENST00000639002 CTHRC1Q96CG8 243 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms