RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 FAM183BPQ6ZVS7 135 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 EIF1ADQ8N9N8 165 aaKnown RBP11.12□□□□□ -0.63
CLN3-248ENST00000636355 C12orf50Q8NA57 414 aaPredicted RBP11.12□□□□□ -0.63
CLN3-248ENST00000636355 NOA1Q8NC60 698 aaKnown RBP11.12□□□□□ -0.63
CLN3-248ENST00000636355 DIS3LQ8TF46 1054 aaKnown RBP11.12□□□□□ -0.63
CLN3-248ENST00000636355 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.12□□□□□ -0.63
CLN3-248ENST00000636355 KRT35Q92764 455 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 TBCBQ99426 244 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 PKMYT1Q99640 499 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 PAAF1Q9BRP4 392 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 COLEC11Q9BWP8 271 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 PPP1R12CQ9BZL4 782 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 TRIM7Q9C029 511 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 CRTAC1Q9NQ79 661 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 ST7Q9NRC1 585 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 METTL5Q9NRN9 209 aaKnown RBP11.12□□□□□ -0.63
CLN3-248ENST00000636355 HOMER3Q9NSC5 361 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 STK39Q9UEW8 545 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 ADAM28Q9UKQ2 775 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 ATP11BQ9Y2G3 1177 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 KIAA1671Q9BY89 1806 aa11.12□□□□□ -0.63
CLN3-248ENST00000636355 OR6C75A6NL08 312 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 KRIT1O00522 736 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 ERLIN1O75477 346 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 DAB1O75553 588 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 DDHD2O94830 711 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 TIMP1P01033 207 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 MYCP01106 439 aaPredicted RBP11.11□□□□□ -0.63
CLN3-248ENST00000636355 FGGP02679 453 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 PDGFRBP09619 1106 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 GPD1P21695 349 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 ADORA2BP29275 332 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 SSTR3P32745 418 aaPredicted RBP11.11□□□□□ -0.63
CLN3-248ENST00000636355 CYP2C18P33260 490 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 RFC1P35251 1148 aaPredicted RBP11.11□□□□□ -0.63
CLN3-248ENST00000636355 NFE2Q16621 373 aaPredicted RBP11.11□□□□□ -0.63
CLN3-248ENST00000636355 CYP1B1Q16678 543 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 MAP9Q49MG5 647 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 C2CD6Q53TS8 623 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 ZNF280DQ6N043 979 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 CLEC20AQ6ZU45 233 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 BEND5Q7L4P6 421 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 DCP1BQ8IZD4 617 aaKnown RBP11.11□□□□□ -0.63
CLN3-248ENST00000636355 UBA3Q8TBC4 463 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 TEKT4Q8WW24 435 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 IRGQQ8WZA9 623 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 PCED1BQ96HM7 432 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 BTBD6Q96KE9 485 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 CEP295NLQ96MC4 621 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 RTP3Q9BQQ7 232 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 FAM129AQ9BZQ8 928 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 ANKZF1Q9H8Y5 726 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 DMAP1Q9NPF5 467 aaPredicted RBP11.11□□□□□ -0.63
CLN3-248ENST00000636355 CNGB3Q9NQW8 809 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 RBM12Q9NTZ6 932 aaKnown RBP11.11□□□□□ -0.63
CLN3-248ENST00000636355 RRN3Q9NYV6 651 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 CHORDC1Q9UHD1 332 aaPredicted RBP11.11□□□□□ -0.63
CLN3-248ENST00000636355 PTPRSQ13332 1948 aa11.11□□□□□ -0.63
CLN3-248ENST00000636355 GOLGA8SH3BPF8 625 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 FSCN2O14926 492 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 PAPSS1O43252 624 aaPredicted RBP11.1□□□□□ -0.63
CLN3-248ENST00000636355 B4GALT3O60512 393 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 PHF2O75151 1096 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 LRCH4O75427 683 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 AMHP03971 560 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 SDC4P31431 198 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 CHRNA3P32297 505 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 BRCC3P46736 316 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 OR1G1P47890 313 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 MARCKSL1P49006 195 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 FNTAP49354 379 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 DNA2P51530 1060 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 CCL23P55773 120 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 SLC25A11Q02978 314 aaKnown RBP11.1□□□□□ -0.63
CLN3-248ENST00000636355 C2orf54Q08AI8 447 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 DHX34Q14147 1143 aaKnown RBP11.1□□□□□ -0.63
CLN3-248ENST00000636355 LONRF2Q1L5Z9 754 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 LRRC26Q2I0M4 334 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 RAB41Q5JT25 222 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 HABP4Q5JVS0 413 aaKnown RBP11.1□□□□□ -0.63
CLN3-248ENST00000636355 OR6B2Q6IFH4 312 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 VSTM1Q6UX27 236 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 PAQR9Q6ZVX9 377 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 MAATS1Q7Z4T9 603 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 UBE2Q1Q7Z7E8 422 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 PIGZQ86VD9 579 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 ZNF280BQ86YH2 543 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 SLC13A5Q86YT5 568 aaPredicted RBP11.1□□□□□ -0.63
CLN3-248ENST00000636355 PSTKQ8IV42 348 aaKnown RBP11.1□□□□□ -0.63
CLN3-248ENST00000636355 RCOR2Q8IZ40 523 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 SIX6OS1Q8N1H7 587 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 TMEM199Q8N511 208 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 CCDC26Q8TAB7 109 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 C2orf15Q8WU43 125 aaKnown RBP11.1□□□□□ -0.63
CLN3-248ENST00000636355 HNRNPLLQ8WVV9 542 aaKnown RBP11.1□□□□□ -0.63
CLN3-248ENST00000636355 SLCO2A1Q92959 643 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 MYLPFQ96A32 169 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 SCLYQ96I15 445 aa11.1□□□□□ -0.63
CLN3-248ENST00000636355 PAWRQ96IZ0 340 aaKnown RBP11.1□□□□□ -0.63
CLN3-248ENST00000636355 MS4A14Q96JA4 679 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms