RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 PGK2P07205 417 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 FDFT1P37268 417 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 PPATQ06203 517 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 BMPR2Q13873 1038 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 DAB2IPQ5VWQ8 1189 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 GPRC5AQ8NFJ5 357 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 IRAK4Q9NWZ3 460 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 SUFUQ9UMX1 484 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 IQCA1LA6NCM1 817 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 ETFBP38117 255 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 AQP5P55064 265 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 HDAC4P56524 1084 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 DGKDQ16760 1214 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 GNASQ5JWF2 1037 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 WDR59Q6PJI9 974 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 GLB1LQ6UWU2 654 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 CHSY1Q86X52 802 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 TTC30BQ8N4P2 665 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 FRMD8P1Q9BZ68 369 aaPredicted RBP14.53□□□□□ -0.08
CPSF1-212ENST00000616140 KCTD10Q9H3F6 313 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 PXMP2Q9NR77 195 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 ZNF711Q9Y462 761 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 HIST1H2AGP0C0S8 130 aaPredicted RBP14.53□□□□□ -0.08
CPSF1-212ENST00000616140 HIST1H2ADP20671 130 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 RPS12P25398 132 aaKnown RBP14.53□□□□□ -0.08
CPSF1-212ENST00000616140 PNPLA4P41247 253 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 RAP1GAPP47736 663 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 GCLCP48506 637 aaPredicted RBP14.53□□□□□ -0.08
CPSF1-212ENST00000616140 C1QBPQ07021 282 aaKnown RBP14.53□□□□□ -0.08
CPSF1-212ENST00000616140 PDK2Q15119 407 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 FAM83EQ2M2I3 478 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 MFN1Q8IWA4 741 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 HIST1H2AHQ96KK5 128 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 MTMR9Q96QG7 549 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 HIST1H2AJQ99878 128 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 H2AFJQ9BTM1 129 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 KATNAL1Q9BW62 490 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 KDM4CQ9H3R0 1056 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 WDCPQ9H6R7 721 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 MRGBPQ9NV56 204 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 ZSCAN9O15535 394 aaPredicted RBP14.53□□□□□ -0.08
CPSF1-212ENST00000616140 SRP72O76094 671 aaKnown RBP14.53□□□□□ -0.08
CPSF1-212ENST00000616140 SUPT7LO94864 414 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 HNRNPCP07910 306 aaKnown RBP eCLIP14.53□□□□□ -0.08
CPSF1-212ENST00000616140 PTPN7P35236 360 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 CASP5P51878 434 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 VCPP55072 806 aaKnown RBP14.53□□□□□ -0.08
CPSF1-212ENST00000616140 ANKRD13AQ8IZ07 590 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 WNK4Q96J92 1243 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 PRG3Q9Y2Y8 225 aaPredicted RBP14.53□□□□□ -0.08
CPSF1-212ENST00000616140 FARP1Q9Y4F1 1045 aaPredicted RBP14.53□□□□□ -0.08
CPSF1-212ENST00000616140 PIK3CDO00329 1044 aa14.52□□□□□ -0.08
CPSF1-212ENST00000616140 KLRC4O43908 158 aa14.52□□□□□ -0.08
CPSF1-212ENST00000616140 LSM8O95777 96 aaKnown RBP14.52□□□□□ -0.08
CPSF1-212ENST00000616140 PYGLP06737 847 aa14.52□□□□□ -0.08
CPSF1-212ENST00000616140 STAG3L1P0CL83 205 aa14.52□□□□□ -0.08
CPSF1-212ENST00000616140 GLRBP48167 497 aa14.52□□□□□ -0.08
CPSF1-212ENST00000616140 TEX9Q8N6V9 391 aa14.52□□□□□ -0.08
CPSF1-212ENST00000616140 CYGBQ8WWM9 190 aa14.52□□□□□ -0.08
CPSF1-212ENST00000616140 KAT5Q92993 513 aa14.52□□□□□ -0.08
CPSF1-212ENST00000616140 SH3KBP1Q96B97 665 aa14.52□□□□□ -0.08
CPSF1-212ENST00000616140 SH3GL3Q99963 347 aa14.52□□□□□ -0.08
CPSF1-212ENST00000616140 DCLRE1BQ9H816 532 aa14.52□□□□□ -0.08
CPSF1-212ENST00000616140 PCDH9Q9HC56 1237 aa14.52□□□□□ -0.08
CPSF1-212ENST00000616140 KCND1Q9NSA2 647 aa14.52□□□□□ -0.08
CPSF1-212ENST00000616140 SHOC2Q9UQ13 582 aa14.52□□□□□ -0.08
CPSF1-212ENST00000616140 RCCD1A6NED2 376 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 SUPT3HB4E1H0 165 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 AP1G2O75843 785 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 PECAM1P16284 738 aaPredicted RBP14.52□□□□□ -0.09
CPSF1-212ENST00000616140 MAP4P27816 1152 aaKnown RBP14.52□□□□□ -0.09
CPSF1-212ENST00000616140 SSTR1P30872 391 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 SEPT5Q99719 369 aaPredicted RBP14.52□□□□□ -0.09
CPSF1-212ENST00000616140 DCLK3Q9C098 648 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 CHST12Q9NRB3 414 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 V9GYQ6 96 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 TNS2Q63HR2 1409 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 ADGRA2Q96PE1 1338 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 RRN3P2A6NIE6 340 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 TISP43B9A030 160 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 CXCL8P10145 99 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 GCNT1Q02742 428 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 PTK6Q13882 451 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 MGAT5BQ3V5L5 792 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 MFSD7Q6UXD7 560 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 ELMOD1Q8N336 334 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 ZSWIM2Q8NEG5 633 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 INPP5DQ92835 1189 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 FAM163AQ96GL9 167 aaPredicted RBP14.52□□□□□ -0.09
CPSF1-212ENST00000616140 PKP3Q9Y446 797 aa14.52□□□□□ -0.09
CPSF1-212ENST00000616140 ANXA9O76027 345 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 ACADSP16219 412 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 BGNP21810 368 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 SERPINB3P29508 390 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 RANBP1P43487 201 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 NBPF20Q3BBV1 942 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 LRRC55Q6ZSA7 311 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 CCNJLQ8IV13 435 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 CD274Q9NZQ7 290 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 AP4E1Q9UPM8 1137 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms