RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 HEXIM2Q96MH2 286 aaKnown RBP17.87■□□□□ 0.45
TRIM28-215ENST00000601150 KCNK16Q96T55 309 aa17.87■□□□□ 0.45
TRIM28-215ENST00000601150 SLC46A2Q9BY10 475 aa17.87■□□□□ 0.45
TRIM28-215ENST00000601150 INTS2Q9H0H0 1204 aaKnown RBP17.87■□□□□ 0.45
TRIM28-215ENST00000601150 CSNK1G1Q9HCP0 422 aa17.87■□□□□ 0.45
TRIM28-215ENST00000601150 ANO10Q9NW15 660 aa17.87■□□□□ 0.45
TRIM28-215ENST00000601150 HELZP42694 1942 aaKnown RBP17.87■□□□□ 0.45
TRIM28-215ENST00000601150 RTN3O95197 1032 aaPredicted RBP17.86■□□□□ 0.45
TRIM28-215ENST00000601150 PFKPQ01813 784 aa17.86■□□□□ 0.45
TRIM28-215ENST00000601150 STX1AQ16623 288 aa17.86■□□□□ 0.45
TRIM28-215ENST00000601150 VITQ6UXI7 678 aa17.86■□□□□ 0.45
TRIM28-215ENST00000601150 CMTM8Q8IZV2 173 aa17.86■□□□□ 0.45
TRIM28-215ENST00000601150 PPM1KQ8N3J5 372 aa17.86■□□□□ 0.45
TRIM28-215ENST00000601150 MAB21L3Q8N8X9 362 aa17.86■□□□□ 0.45
TRIM28-215ENST00000601150 SLC4A11Q8NBS3 891 aa17.86■□□□□ 0.45
TRIM28-215ENST00000601150 SMOQ99835 787 aa17.86■□□□□ 0.45
TRIM28-215ENST00000601150 TRMT61BQ9BVS5 477 aaKnown RBP17.86■□□□□ 0.45
TRIM28-215ENST00000601150 TMEM63CQ9P1W3 806 aa17.86■□□□□ 0.45
TRIM28-215ENST00000601150 HEPACAM2A8MVW5 462 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 PSMC3P17980 439 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 YWHAQP27348 245 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 AVPR1AP37288 418 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 PPP3CCP48454 512 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 MAP3K7CLP57077 242 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 GRM2Q14416 872 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 MAN2A1Q16706 1144 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 TXNDC8Q6A555 127 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 TICRRQ7Z2Z1 1910 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 GPIHBP1Q8IV16 184 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 ARHGEF19Q8IW93 802 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 MFSD6LQ8IWD5 586 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 SIX5Q8N196 739 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 FBXL6Q8N531 539 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 UBR7Q8N806 425 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 ZMIZ2Q8NF64 920 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 ENOX1Q8TC92 643 aaKnown RBP17.85■□□□□ 0.45
TRIM28-215ENST00000601150 SLITRK1Q96PX8 696 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 COMMD8Q9NX08 183 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 OBP2AQ9NY56 170 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 TRPM5Q9NZQ8 1165 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 GCNT4Q9P109 453 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 CA14Q9ULX7 337 aa17.85■□□□□ 0.45
TRIM28-215ENST00000601150 KMT2EQ8IZD2 1858 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 KIF26AQ9ULI4 1882 aaPredicted RBP17.84■□□□□ 0.45
TRIM28-215ENST00000601150 NCANO14594 1321 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 DPYSL4O14531 572 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 TNFRSF10BO14763 440 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 BEST1O76090 585 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 PRAMEF12O95522 483 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 SLC5A3P53794 718 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 GCNT1Q02742 428 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 IFRD2Q12894 506 aaPredicted RBP17.84■□□□□ 0.45
TRIM28-215ENST00000601150 TAF10Q12962 218 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 HSP90AA4PQ58FG1 418 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 PPP1R26Q5T8A7 1209 aaPredicted RBP17.84■□□□□ 0.45
TRIM28-215ENST00000601150 GBP6Q6ZN66 633 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 RRAGAQ7L523 313 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 SUGP1Q8IWZ8 645 aaKnown RBP17.84■□□□□ 0.45
TRIM28-215ENST00000601150 YAF2Q8IY57 180 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 CELF5Q8N6W0 485 aaKnown RBP17.84■□□□□ 0.45
TRIM28-215ENST00000601150 RSPRY1Q96DX4 576 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 MFSD1Q9H3U5 465 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 BRD9Q9H8M2 597 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 TRPC7Q9HCX4 862 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 SAMSN1Q9NSI8 373 aaKnown RBP17.84■□□□□ 0.45
TRIM28-215ENST00000601150 NFE2L3Q9Y4A8 694 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 PCDHB4Q9Y5E5 795 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 COL4A2P08572 1712 aa17.84■□□□□ 0.45
TRIM28-215ENST00000601150 TRAV19A0A0A6YYK7 116 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 GTPBP10A4D1E9 387 aaKnown RBP17.83■□□□□ 0.44
TRIM28-215ENST00000601150 KCNJ18B7U540 433 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 PDGFBP01127 241 aaPredicted RBP17.83■□□□□ 0.44
TRIM28-215ENST00000601150 USP17L7P0C7H9 530 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 PRKCSHP14314 528 aaPredicted RBP17.83■□□□□ 0.44
TRIM28-215ENST00000601150 NPR3P17342 541 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 ACO1P21399 889 aaKnown RBP17.83■□□□□ 0.44
TRIM28-215ENST00000601150 EEF1GP26641 437 aaKnown RBP17.83■□□□□ 0.44
TRIM28-215ENST00000601150 GDI1P31150 447 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 KCNJ12Q14500 433 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 ARHGAP17Q68EM7 881 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 CAVIN1Q6NZI2 390 aaKnown RBP17.83■□□□□ 0.44
TRIM28-215ENST00000601150 CLEC20AQ6ZU45 233 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 C11orf57Q6ZUT1 292 aaPredicted RBP17.83■□□□□ 0.44
TRIM28-215ENST00000601150 PDZD8Q8NEN9 1154 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 SCAMP5Q8TAC9 235 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 OVCA2Q8WZ82 227 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 DNASE1L2Q92874 299 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 KAT5Q92993 513 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 FBXO32Q969P5 355 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 TUBGCP2Q9BSJ2 902 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 CRACR2AQ9BSW2 395 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 DUSP16Q9BY84 665 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 SMG9Q9H0W8 520 aaKnown RBP17.83■□□□□ 0.44
TRIM28-215ENST00000601150 KIF9Q9HAQ2 790 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 PNPLA8Q9NP80 782 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 ARHGEF3Q9NR81 526 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 TDP1Q9NUW8 608 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 IL37Q9NZH6 218 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 KIAA1257Q9ULG3 409 aa17.83■□□□□ 0.44
TRIM28-215ENST00000601150 KRBA1A5PL33 1030 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms