RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 EIF4E1BA6NMX2 242 aaKnown RBP10.05□□□□□ -0.8
TRIM28-208ENST00000597172 M0QZQ0 153 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 CYP26A1O43174 497 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 TACC1O75410 805 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 GFPT2O94808 682 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 KCNK5O95279 499 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 EFEMP2O95967 443 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 CALCAP01258 141 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 TPM1P09493 284 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 FAM163BP0C2L3 166 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 SKILP12757 684 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 P4HA1P13674 534 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 CD58P19256 250 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 FECHP22830 423 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 PAX3P23760 479 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 LMO2P25791 158 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 STAT1P42224 750 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 ZNF132P52740 706 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 GSDMDP57764 484 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 STARD6P59095 220 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 TNNC1P63316 161 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 MEA1Q16626 185 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 SFMBT2Q5VUG0 894 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 WSCD1Q658N2 575 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 HGSNATQ68CP4 663 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 DPH6Q7L8W6 267 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 TAS1R1Q7RTX1 841 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 OSTM1Q86WC4 334 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 TMEM173Q86WV6 379 aaPredicted RBP10.05□□□□□ -0.8
TRIM28-208ENST00000597172 LRRC8AQ8IWT6 810 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 PDCL2Q8N4E4 241 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 TOP6BLQ8N6T0 577 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 OLIG1Q8TAK6 271 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 HASPINQ8TF76 798 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 KBTBD7Q8WVZ9 684 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 SHDQ96IW2 340 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 SUSD3Q96L08 255 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 ZNF830Q96NB3 372 aaPredicted RBP10.05□□□□□ -0.8
TRIM28-208ENST00000597172 SPAG5Q96R06 1193 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 PANX2Q96RD6 677 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 TWNKQ96RR1 684 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 MMS19Q96T76 1030 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 CHP1Q99653 195 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 COLEC11Q9BWP8 271 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 GPR62Q9BZJ7 368 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 ACP6Q9NPH0 428 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 PCDHB4Q9Y5E5 795 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 TIMM13Q9Y5L4 95 aaPredicted RBP10.05□□□□□ -0.8
TRIM28-208ENST00000597172 SCN1AP35498 2009 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 ADAMTS20P59510 1910 aa10.05□□□□□ -0.8
TRIM28-208ENST00000597172 PIEZO2Q9H5I5 2752 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 SPTAN1Q13813 2472 aaKnown RBP10.04□□□□□ -0.8
TRIM28-208ENST00000597172 DOCK8Q8NF50 2099 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 GOLGA6L6A8MZA4 724 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 GABRDO14764 452 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 HCRTO43612 131 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 CILPO75339 1184 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 TADA2AO75478 443 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 CLSTN1O94985 981 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 PLEKP08567 350 aaPredicted RBP10.04□□□□□ -0.8
TRIM28-208ENST00000597172 WARSP23381 471 aaKnown RBP10.04□□□□□ -0.8
TRIM28-208ENST00000597172 DEKP35659 375 aaKnown RBP10.04□□□□□ -0.8
TRIM28-208ENST00000597172 GNL1P36915 607 aaPredicted RBP10.04□□□□□ -0.8
TRIM28-208ENST00000597172 ALDH7A1P49419 539 aaKnown RBP10.04□□□□□ -0.8
TRIM28-208ENST00000597172 LIMK1P53667 647 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 RAD23BP54727 409 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 ARID5AQ03989 594 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 KRT17Q04695 432 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 INCA1Q0VD86 236 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 SMC1AQ14683 1233 aaKnown RBP10.04□□□□□ -0.8
TRIM28-208ENST00000597172 PTPN14Q15678 1187 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 SMYD5Q6GMV2 418 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 TSSK4Q6SA08 328 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 TMEM270Q6UE05 265 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 KCNT2Q6UVM3 1135 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 DSTYKQ6XUX3 929 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 GPR149Q86SP6 731 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 CELF5Q8N6W0 485 aaKnown RBP10.04□□□□□ -0.8
TRIM28-208ENST00000597172 SLC4A11Q8NBS3 891 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 APPL2Q8NEU8 664 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 FEZF2Q8TBJ5 459 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 NXPE3Q969Y0 559 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 IGSF21Q96ID5 467 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 VN1R3Q9BXE9 311 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 FAM126AQ9BYI3 521 aaPredicted RBP10.04□□□□□ -0.8
TRIM28-208ENST00000597172 ADAM33Q9BZ11 813 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 ELOVL4Q9GZR5 314 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 NUCKS1Q9H1E3 243 aaKnown RBP10.04□□□□□ -0.8
TRIM28-208ENST00000597172 KCNF1Q9H3M0 494 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 FAM124BQ9H5Z6 455 aaPredicted RBP10.04□□□□□ -0.8
TRIM28-208ENST00000597172 ARHGAP20Q9P2F6 1191 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 HMGXB4Q9UGU5 601 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 ADAM28Q9UKQ2 775 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 TEP1Q99973 2627 aaKnown RBP10.04□□□□□ -0.8
TRIM28-208ENST00000597172 DENND4AQ7Z401 1863 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 APC2O95996 2303 aa10.04□□□□□ -0.8
TRIM28-208ENST00000597172 TDRD15B5MCY1 1934 aaKnown RBP10.03□□□□□ -0.8
TRIM28-208ENST00000597172 KANSL1LA0AUZ9 987 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 HUS1O60921 280 aa10.03□□□□□ -0.8
TRIM28-208ENST00000597172 CYP11A1P05108 521 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms