RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 APOBEC3GQ9HC16 384 aaKnown RBP11.19□□□□□ -0.62
LIG1-213ENST00000596672 TDP1Q9NUW8 608 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 MAGEC2Q9UBF1 373 aaPredicted RBP11.19□□□□□ -0.62
LIG1-213ENST00000596672 NXF1Q9UBU9 619 aaKnown RBP11.19□□□□□ -0.62
LIG1-213ENST00000596672 WNT6Q9Y6F9 365 aa11.19□□□□□ -0.62
LIG1-213ENST00000596672 A0A1W2PQ27 194 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 A0A1W2PQ64 194 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 A0A1W2PQD8 194 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 ZNF840PA6NDX5 716 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 PDXKO00764 312 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 TNFRSF10BO14763 440 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 TRIM49P0CI25 452 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 TRIM49CP0CI26 452 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 PDIA4P13667 645 aaKnown RBP11.18□□□□□ -0.62
LIG1-213ENST00000596672 KRT85P78386 507 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 CYP27A1Q02318 531 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 USP4Q13107 963 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 ZNF268Q14587 947 aaPredicted RBP11.18□□□□□ -0.62
LIG1-213ENST00000596672 ITPRIPL2Q3MIP1 535 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 ZACNQ401N2 412 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 SCARA5Q6ZMJ2 495 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 RALGPS2Q86X27 583 aaPredicted RBP11.18□□□□□ -0.62
LIG1-213ENST00000596672 FUKQ8N0W3 1084 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 ENGASEQ8NFI3 743 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 OR6B3Q8NGW1 331 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 SCAMP5Q8TAC9 235 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 CSGALNACT1Q8TDX6 532 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 C8orf48Q96LL4 319 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 FNBP1Q96RU3 617 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 C8orf33Q9H7E9 229 aaPredicted RBP11.18□□□□□ -0.62
LIG1-213ENST00000596672 PARD6AQ9NPB6 346 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 EXOC1Q9NV70 894 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 ZSCAN32Q9NX65 697 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 TRAF3IP3Q9Y228 551 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 MRPS17Q9Y2R5 130 aaKnown RBP11.18□□□□□ -0.62
LIG1-213ENST00000596672 ACACBO00763 2458 aa11.18□□□□□ -0.62
LIG1-213ENST00000596672 CHURC1-FNTBB4DL54 471 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 DPYSL4O14531 572 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 ZNF202O95125 648 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 OLFM2O95897 454 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 EGFP01133 1207 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 FAM163BP0C2L3 166 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 MAGEA9P43362 315 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 ASPAP45381 313 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 FNTBP49356 437 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 GALK1P51570 392 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 PSMD2Q13200 908 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 RUNX3Q13761 415 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 NCOA4Q13772 614 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 TAF12Q16514 161 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 EML3Q32P44 896 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 TMEM196Q5HYL7 178 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 VSTM1Q6UX27 236 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 KIAA2013Q8IYS2 634 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 FMR1NBQ8N0W7 255 aaPredicted RBP11.17□□□□□ -0.62
LIG1-213ENST00000596672 C12orf29Q8N999 325 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 B3GALNT2Q8NCR0 500 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 TMC2Q8TDI7 906 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 SH3RF2Q8TEC5 729 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 WHAMMQ8TF30 809 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 MRPS31Q92665 395 aaKnown RBP11.17□□□□□ -0.62
LIG1-213ENST00000596672 SEMA4DQ92854 862 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 RMDN1Q96DB5 314 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 P2RY11Q96G91 374 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 ZFRQ96KR1 1074 aaKnown RBP11.17□□□□□ -0.62
LIG1-213ENST00000596672 SMOQ99835 787 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 EPC1Q9H2F5 836 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 TRPC7Q9HCX4 862 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 IL37Q9NZH6 218 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 CGNQ9P2M7 1197 aaKnown RBP11.17□□□□□ -0.62
LIG1-213ENST00000596672 CEP295Q9C0D2 2601 aa11.17□□□□□ -0.62
LIG1-213ENST00000596672 A8MXQ7 604 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 TRDMT1O14717 391 aaKnown RBP11.16□□□□□ -0.62
LIG1-213ENST00000596672 ASS1P00966 412 aaKnown RBP11.16□□□□□ -0.62
LIG1-213ENST00000596672 OAS1P00973 400 aaKnown RBP11.16□□□□□ -0.62
LIG1-213ENST00000596672 HLA-DRAP01903 254 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 CCDC130P13994 396 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 DDX6P26196 483 aaKnown RBP eCLIP11.16□□□□□ -0.62
LIG1-213ENST00000596672 ATICP31939 592 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 GJA4P35212 333 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 AVPR1AP37288 418 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 GRIK1P39086 918 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 CXCL12P48061 93 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 PXNP49023 591 aaPredicted RBP11.16□□□□□ -0.62
LIG1-213ENST00000596672 PMS1P54277 932 aaKnown RBP11.16□□□□□ -0.62
LIG1-213ENST00000596672 NOP14P78316 857 aaKnown RBP11.16□□□□□ -0.62
LIG1-213ENST00000596672 FAM160A1Q05DH4 1040 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 TAF10Q12962 218 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 BIRC3Q13489 604 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 PNOCQ13519 176 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 MTF1Q14872 753 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 LPAL2Q16609 132 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 C4orf50Q6ZRC1 276 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 DENND5BQ6ZUT9 1274 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 GPRIN1Q7Z2K8 1008 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 ACOT1Q86TX2 421 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 FAM35AQ86V20 835 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 SPEM1Q8N4L4 309 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 TAS1R2Q8TE23 839 aa11.16□□□□□ -0.62
LIG1-213ENST00000596672 GCNAQ96QF7 691 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms