RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 YAF2Q8IY57 180 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 CMTM8Q8IZV2 173 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 PJA1Q8NG27 643 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 DHTKD1Q96HY7 919 aaPredicted RBP16.08■□□□□ 0.16
TRIM28-205ENST00000595028 TNIP3Q96KP6 325 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 SLC46A2Q9BY10 475 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 B3GNT5Q9BYG0 378 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 BCO2Q9BYV7 579 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 NIF3L1Q9GZT8 377 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 APOBEC3GQ9HC16 384 aaKnown RBP16.08■□□□□ 0.16
TRIM28-205ENST00000595028 TRPV5Q9NQA5 729 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 HEBP1Q9NRV9 189 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 HMGXB4Q9UGU5 601 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 ATP8B3O60423 1300 aa16.08■□□□□ 0.16
TRIM28-205ENST00000595028 KANSL1LA0AUZ9 987 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 F8VP50 259 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 DPYSL4O14531 572 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 ZNF263O14978 683 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 STX10O60499 249 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 CD44P16070 742 aaKnown RBP16.07■□□□□ 0.16
TRIM28-205ENST00000595028 BMP6P22004 513 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 AVPR1AP37288 418 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 CACNA2D1P54289 1103 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 INCA1Q0VD86 236 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 MORC3Q14149 939 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 TXNDC8Q6A555 127 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 ISM2Q6H9L7 571 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 DENND5BQ6ZUT9 1274 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 FAM35AQ86V20 835 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 MON1AQ86VX9 555 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 GPIHBP1Q8IV16 184 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 MAB21L3Q8N8X9 362 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 CCDC150Q8NCX0 1101 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 C8orf48Q96LL4 319 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 LRRC3BQ96PB8 259 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 HINFPQ9BQA5 517 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 SMG9Q9H0W8 520 aaKnown RBP16.07■□□□□ 0.16
TRIM28-205ENST00000595028 LTB4R2Q9NPC1 389 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.07■□□□□ 0.165e-11■■□□□ 13.7
TRIM28-205ENST00000595028 TMEM30AQ9NV96 361 aa16.07■□□□□ 0.16
TRIM28-205ENST00000595028 CLDN5O00501 218 aa16.06■□□□□ 0.16
TRIM28-205ENST00000595028 CHADO15335 359 aa16.06■□□□□ 0.16
TRIM28-205ENST00000595028 NDST1P52848 882 aa16.06■□□□□ 0.16
TRIM28-205ENST00000595028 USP46P62068 366 aa16.06■□□□□ 0.16
TRIM28-205ENST00000595028 ORC1Q13415 861 aa16.06■□□□□ 0.16
TRIM28-205ENST00000595028 DCAF17Q5H9S7 520 aaPredicted RBP16.06■□□□□ 0.16
TRIM28-205ENST00000595028 UNC93AQ86WB7 457 aa16.06■□□□□ 0.16
TRIM28-205ENST00000595028 DCLK2Q8N568 766 aa16.06■□□□□ 0.16
TRIM28-205ENST00000595028 CELF5Q8N6W0 485 aaKnown RBP16.06■□□□□ 0.16
TRIM28-205ENST00000595028 TTLL2Q9BWV7 592 aa16.06■□□□□ 0.16
TRIM28-205ENST00000595028 KIF9Q9HAQ2 790 aa16.06■□□□□ 0.16
TRIM28-205ENST00000595028 CYP3A43Q9HB55 503 aa16.06■□□□□ 0.16
TRIM28-205ENST00000595028 DLGAP2Q9P1A6 1054 aa16.06■□□□□ 0.16
TRIM28-205ENST00000595028 SIT1Q9Y3P8 196 aa16.06■□□□□ 0.16
TRIM28-205ENST00000595028 USP24Q9UPU5 2620 aa16.06■□□□□ 0.16
TRIM28-205ENST00000595028 MYO16Q9Y6X6 1858 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 SHISA7A6NL88 538 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 PPP1R3GB7ZBB8 358 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 BIN1O00499 593 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 LRRN2O75325 713 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 DCNP07585 359 aaKnown RBP16.05■□□□□ 0.16
TRIM28-205ENST00000595028 TARSP26639 723 aaKnown RBP16.05■□□□□ 0.16
TRIM28-205ENST00000595028 ZNF268Q14587 947 aaPredicted RBP16.05■□□□□ 0.16
TRIM28-205ENST00000595028 UBXN2BQ14CS0 331 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 RSPO4Q2I0M5 234 aaPredicted RBP16.05■□□□□ 0.16
TRIM28-205ENST00000595028 ARHGAP29Q52LW3 1261 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 TCERG1LQ5VWI1 586 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 KLHL10Q6JEL2 608 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 TTI2Q6NXR4 508 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 FOXR2Q6PJQ5 311 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 ACOT1Q86TX2 421 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 FUKQ8N0W3 1084 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 FBXL13Q8NEE6 735 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 BPIFB1Q8TDL5 484 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 SEMA4DQ92854 862 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 USP13Q92995 863 aaPredicted RBP16.05■□□□□ 0.16
TRIM28-205ENST00000595028 SMARCD1Q96GM5 515 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 TWNKQ96RR1 684 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 OSBPL6Q9BZF3 934 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 TRPC7Q9HCX4 862 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 KRT82Q9NSB4 513 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 EHD2Q9NZN4 543 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 ARMCX3Q9UH62 379 aaPredicted RBP16.05■□□□□ 0.16
TRIM28-205ENST00000595028 CCL26Q9Y258 94 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 PIAS3Q9Y6X2 628 aa16.05■□□□□ 0.16
TRIM28-205ENST00000595028 CACNA1IQ9P0X4 2223 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 FANCMQ8IYD8 2048 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 GPR179Q6PRD1 2367 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 TRAV19A0A0A6YYK7 116 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 CCDC130P13994 396 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 GLULP15104 373 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 CD72P21854 359 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 PLCB2Q00722 1185 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 CBWD6Q4V339 395 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 CBWD3Q5JTY5 395 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 CBWD5Q5RIA9 395 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 ZNF852Q6ZMS4 543 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 PAQR9Q6ZVX9 377 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 CRYBG2Q8N1P7 616 aa16.04■□□□□ 0.16
TRIM28-205ENST00000595028 CSGALNACT1Q8TDX6 532 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms