RNA–Protein interactions for RNA: ENST00000592017.5

CLIP3-205, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 5

Gene CLIP3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-205ENST00000592017 MED10Q9BTT4 135 aa14.82□□□□□ -0.04
CLIP3-205ENST00000592017 SRRTQ9BXP5 876 aaKnown RBP14.82□□□□□ -0.04
CLIP3-205ENST00000592017 ZNF518BQ9C0D4 1074 aa14.82□□□□□ -0.04
CLIP3-205ENST00000592017 SMG9Q9H0W8 520 aaKnown RBP14.82□□□□□ -0.04
CLIP3-205ENST00000592017 RAB20Q9NX57 234 aa14.82□□□□□ -0.04
CLIP3-205ENST00000592017 SLC38A8A6NNN8 435 aa14.81□□□□□ -0.04
CLIP3-205ENST00000592017 WEE1P30291 646 aa14.81□□□□□ -0.04
CLIP3-205ENST00000592017 MAGEA11P43364 429 aa14.81□□□□□ -0.04
CLIP3-205ENST00000592017 WDR44Q5JSH3 913 aa14.81□□□□□ -0.04
CLIP3-205ENST00000592017 FOXR2Q6PJQ5 311 aa14.81□□□□□ -0.04
CLIP3-205ENST00000592017 CREBRFQ8IUR6 639 aa14.81□□□□□ -0.04
CLIP3-205ENST00000592017 GPT2Q8TD30 523 aa14.81□□□□□ -0.04
CLIP3-205ENST00000592017 B3GNT5Q9BYG0 378 aa14.81□□□□□ -0.04
CLIP3-205ENST00000592017 BCO2Q9BYV7 579 aa14.81□□□□□ -0.04
CLIP3-205ENST00000592017 ELOVL4Q9GZR5 314 aa14.81□□□□□ -0.04
CLIP3-205ENST00000592017 RWDD2AQ9UIY3 292 aa14.81□□□□□ -0.04
CLIP3-205ENST00000592017 PRR23AA6NEV1 266 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 F8VP50 259 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 TRIM66O15016 1216 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 CHADO15335 359 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 NOL4O94818 638 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 FGFR1OPO95684 399 aaKnown RBP14.8□□□□□ -0.04
CLIP3-205ENST00000592017 GNA14O95837 355 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 SP9P0CG40 484 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 CCDC130P13994 396 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 TRIM21P19474 475 aaKnown RBP14.8□□□□□ -0.04
CLIP3-205ENST00000592017 CACNA2D1P54289 1103 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 DPCR1Q3MIW9 517 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 VSTM1Q6UX27 236 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 FAM35AQ86V20 835 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 YAF2Q8IY57 180 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 MLKLQ8NB16 471 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 ZFYVE19Q96K21 471 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 CYP3A43Q9HB55 503 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 FAM49BQ9NUQ9 324 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 SPATA6Q9NWH7 488 aaPredicted RBP14.8□□□□□ -0.04
CLIP3-205ENST00000592017 OBP2AQ9NY56 170 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 NDRG2Q9UN36 371 aaKnown RBP14.8□□□□□ -0.04
CLIP3-205ENST00000592017 PIAS3Q9Y6X2 628 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 R4GN57 208 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 ATP8B3O60423 1300 aa14.8□□□□□ -0.04
CLIP3-205ENST00000592017 MAN2B1O00754 1011 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 TADA3O75528 432 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 CCDC192P0DO97 292 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 SOX9P48436 509 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 FMO5P49326 533 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 MCCD1P59942 119 aaPredicted RBP14.79□□□□□ -0.04
CLIP3-205ENST00000592017 IFRD2Q12894 506 aaPredicted RBP14.79□□□□□ -0.04
CLIP3-205ENST00000592017 LRMPQ12912 555 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 TPD52L1Q16890 204 aaPredicted RBP14.79□□□□□ -0.04
CLIP3-205ENST00000592017 ZNF394Q53GI3 561 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 TXNDC8Q6A555 127 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 MON1AQ86VX9 555 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 UNC93AQ86WB7 457 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 CMTM8Q8IZV2 173 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 MAB21L3Q8N8X9 362 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 TTC8Q8TAM2 541 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 FAM3CQ92520 227 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 TATDN2Q93075 761 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 NKD2Q969F2 451 aaPredicted RBP14.79□□□□□ -0.04
CLIP3-205ENST00000592017 MYRFLQ96LU7 910 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 TWNKQ96RR1 684 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 ARID3AQ99856 593 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 KRT82Q9NSB4 513 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 UXTQ9UBK9 157 aaPredicted RBP14.79□□□□□ -0.04
CLIP3-205ENST00000592017 DACH1Q9UI36 760 aa14.79□□□□□ -0.04
CLIP3-205ENST00000592017 MRPS17Q9Y2R5 130 aaKnown RBP14.79□□□□□ -0.04
CLIP3-205ENST00000592017 GVINP1Q7Z2Y8 2422 aa14.78□□□□□ -0.04
CLIP3-205ENST00000592017 GPR179Q6PRD1 2367 aa14.78□□□□□ -0.04
CLIP3-205ENST00000592017 CFAP54Q96N23 3096 aa14.78□□□□□ -0.04
CLIP3-205ENST00000592017 DPYSL4O14531 572 aa14.78□□□□□ -0.04
CLIP3-205ENST00000592017 ADORA2BP29275 332 aa14.78□□□□□ -0.04
CLIP3-205ENST00000592017 MAGEA9P43362 315 aa14.78□□□□□ -0.04
CLIP3-205ENST00000592017 RPS9P46781 194 aaKnown RBP14.78□□□□□ -0.04
CLIP3-205ENST00000592017 MLLT6P55198 1093 aaPredicted RBP14.78□□□□□ -0.04
CLIP3-205ENST00000592017 TNK2Q07912 1038 aa14.78□□□□□ -0.04
CLIP3-205ENST00000592017 INCA1Q0VD86 236 aa14.78□□□□□ -0.04
CLIP3-205ENST00000592017 DENND5BQ6ZUT9 1274 aa14.78□□□□□ -0.04
CLIP3-205ENST00000592017 C12orf29Q8N999 325 aa14.78□□□□□ -0.04
CLIP3-205ENST00000592017 RIN3Q8TB24 985 aa14.78□□□□□ -0.04
CLIP3-205ENST00000592017 SLC2A14Q8TDB8 520 aa14.78□□□□□ -0.04
CLIP3-205ENST00000592017 BPIFB1Q8TDL5 484 aa14.78□□□□□ -0.04
CLIP3-205ENST00000592017 MRPS31Q92665 395 aaKnown RBP14.78□□□□□ -0.04
CLIP3-205ENST00000592017 USP13Q92995 863 aaPredicted RBP14.78□□□□□ -0.04
CLIP3-205ENST00000592017 TRMT2BQ96GJ1 504 aaKnown RBP14.78□□□□□ -0.04
CLIP3-205ENST00000592017 SMARCD1Q96GM5 515 aa14.78□□□□□ -0.04
CLIP3-205ENST00000592017 SPATA17Q96L03 361 aa14.78□□□□□ -0.04
CLIP3-205ENST00000592017 CNOT6LQ96LI5 555 aaKnown RBP14.78□□□□□ -0.04
CLIP3-205ENST00000592017 NT5C1AQ9BXI3 368 aa14.78□□□□□ -0.04
CLIP3-205ENST00000592017 TRPC7Q9HCX4 862 aa14.78□□□□□ -0.04
CLIP3-205ENST00000592017 TMEM30AQ9NV96 361 aa14.78□□□□□ -0.04
CLIP3-205ENST00000592017 CCL26Q9Y258 94 aa14.78□□□□□ -0.04
CLIP3-205ENST00000592017 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.78□□□□□ -0.04
CLIP3-205ENST00000592017 EP300Q09472 2414 aaPredicted RBP14.77□□□□□ -0.04
CLIP3-205ENST00000592017 CACNA1IQ9P0X4 2223 aa14.77□□□□□ -0.04
CLIP3-205ENST00000592017 NCAM2O15394 837 aa14.77□□□□□ -0.05
CLIP3-205ENST00000592017 CILPO75339 1184 aa14.77□□□□□ -0.05
CLIP3-205ENST00000592017 AP1G2O75843 785 aa14.77□□□□□ -0.05
CLIP3-205ENST00000592017 AFPP02771 609 aaKnown RBP14.77□□□□□ -0.05
CLIP3-205ENST00000592017 CHRNB1P11230 501 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms