RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 FAM209BQ5JX69 171 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 FAM160B1Q5W0V3 765 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 TSHZ1Q6ZSZ6 1077 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 USP43Q70EL4 1123 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 USP37Q86T82 979 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 RHOT2Q8IXI1 618 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 FANCBQ8NB91 859 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 PCSK9Q8NBP7 692 aaKnown RBP4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 TMIEQ8NEW7 156 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 KLHL32Q96NJ5 620 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 MED15Q96RN5 788 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 PNKPQ96T60 521 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 SMOQ99835 787 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 RNPEPQ9H4A4 650 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 SMURF2Q9HAU4 748 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 STK32BQ9NY57 414 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 COL20A1Q9P218 1284 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 TMX2Q9Y320 296 aa4.5□□□□□ -1.69
SMCHD1-209ENST00000583441 A0A1W2PPC4 97 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 CLCA1A8K7I4 914 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 F5H423 210 aaPredicted RBP4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 M0QYG6 137 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 APOL1O14791 398 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 TCEA3O75764 348 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 DNAJB5O75953 348 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 FGF18O76093 207 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 INMTO95050 263 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 SLC11A2P49281 568 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 CHN2P52757 468 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 RPS16P62249 146 aaKnown RBP4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 TNFAIP2Q03169 654 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 MIDNQ504T8 468 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 ZNF626Q68DY1 528 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 AWAT2Q6E213 333 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 PPP1R32Q7Z5V6 425 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 GPR149Q86SP6 731 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 MICU3Q86XE3 530 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 YAF2Q8IY57 180 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 SAMD14Q8IZD0 417 aaPredicted RBP4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 DNAJC5GQ8N7S2 189 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 VGLL2Q8N8G2 317 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 ATP11CQ8NB49 1132 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 SLC17A8Q8NDX2 589 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 MAML1Q92585 1016 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 SNX22Q96L94 193 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 UROC1Q96N76 676 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 IMPG2Q9BZV3 1241 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 ZSCAN32Q9NX65 697 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 MYO1AQ9UBC5 1043 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 SLC45A2Q9UMX9 530 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 TBC1D30Q9Y2I9 924 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 CEP83Q9Y592 693 aa4.49□□□□□ -1.69
SMCHD1-209ENST00000583441 PYCARD-AS1I3L0S3 204 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 ADAMTS3O15072 1205 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 PRKCGP05129 697 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 SLC6A2P23975 617 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 CCKARP32238 428 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 PPM1AP35813 382 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 TECP42680 631 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 CARSP49589 748 aaKnown RBP4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 SLFN5Q08AF3 891 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 CTBP1Q13363 440 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 KLF9Q13886 244 aaPredicted RBP4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 DHX8Q14562 1220 aaKnown RBP4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 PDCD2Q16342 344 aaPredicted RBP4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 C3orf38Q5JPI3 329 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 FAM83BQ5T0W9 1011 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 AGAP9Q5VTM2 703 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 CERS3Q8IU89 383 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 LIX1LQ8IVB5 337 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 MPP5Q8N3R9 675 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 RNF152Q8N8N0 203 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 VPS37AQ8NEZ2 397 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 SMCR8Q8TEV9 937 aaPredicted RBP4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 SPSB4Q96A44 273 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 PPP1R10Q96QC0 940 aaKnown RBP4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 WDR12Q9GZL7 423 aaKnown RBP4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 FNIP2Q9P278 1114 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 XPR1Q9UBH6 696 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 HESX1Q9UBX0 185 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 ATP11BQ9Y2G3 1177 aa4.48□□□□□ -1.69
SMCHD1-209ENST00000583441 CCDC195A0A1B0GUA6 201 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 MARCH11A6NNE9 402 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 E7ENX8 843 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 F8W8V4 182 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 POLRMTO00411 1230 aaKnown RBP4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 HNRNPDLO14979 420 aaKnown RBP4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 CCP110O43303 1012 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 NCK2O43639 380 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 MT-ND5P03915 603 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 ATXN1LP0C7T5 689 aaKnown RBP4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 PRR35P0CG20 571 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 TXNP10599 105 aaKnown RBP4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 FCER1AP12319 257 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 MYL4P12829 197 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 FGFR2P21802 821 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 ITPKBP27987 946 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 UCP3P55916 312 aa4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 HTRA4P83105 476 aaPredicted RBP4.47□□□□□ -1.69
SMCHD1-209ENST00000583441 TAP2Q03519 686 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms