RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 MYCBPAPQ8TBZ2 947 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 PLEKHO2Q8TD55 490 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 MRPS31Q92665 395 aaKnown RBP8.64□□□□□ -1.03
VPS53-214ENST00000572607 DNASE1L2Q92874 299 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 IRF7Q92985 503 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 CEP295NLQ96MC4 621 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 MRPL45Q9BRJ2 306 aaKnown RBP8.64□□□□□ -1.03
VPS53-214ENST00000572607 MKNK1Q9BUB5 465 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 LRRC3Q9BY71 257 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 TASP1Q9H6P5 420 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 MMRN2Q9H8L6 949 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 VRTNQ9H8Y1 702 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 TBC1D17Q9HA65 648 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 TRPV4Q9HBA0 871 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 PRDM9Q9NQV7 894 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 DACH1Q9UI36 760 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 PCDHA5Q9Y5H7 936 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 OTOGLQ3ZCN5 2332 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 ANK1P16157 1881 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 TSC2P49815 1807 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 KRBA1A5PL33 1030 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 SLC38A8A6NNN8 435 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 HEPACAM2A8MVW5 462 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 ZNF263O14978 683 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 AXIN1O15169 862 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 SLC16A3O15427 465 aaKnown RBP8.63□□□□□ -1.03
VPS53-214ENST00000572607 HCRTO43612 131 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 NOL4O94818 638 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 TRIM49P0CI25 452 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 TRIM49CP0CI26 452 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 PTPN1P18031 435 aaKnown RBP8.63□□□□□ -1.03
VPS53-214ENST00000572607 FCARP24071 287 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 LMO2P25791 158 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 GDI1P31150 447 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 PRCPP42785 496 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 MAGEA11P43364 429 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 GCLMP48507 274 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 DLG4P78352 724 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 CYP4F8P98187 520 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 FKBP3Q00688 224 aaKnown RBP8.63□□□□□ -1.03
VPS53-214ENST00000572607 LRRC63Q05C16 580 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 GRM2Q14416 872 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 SLC44A4Q53GD3 710 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 COBLL1Q53SF7 1204 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 SCARA3Q6AZY7 606 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 FAM171BQ6P995 826 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 SCARA5Q6ZMJ2 495 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 SV2AQ7L0J3 742 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 LIMS2Q7Z4I7 341 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 FRMD5Q7Z6J6 570 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 CSGALNACT1Q8TDX6 532 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 TNIP3Q96KP6 325 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 ZSWIM3Q96MP5 696 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 PKMYT1Q99640 499 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 MED10Q9BTT4 135 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 PLA2G2FQ9BZM2 168 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 ELOVL4Q9GZR5 314 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 GZF1Q9H116 711 aaPredicted RBP8.63□□□□□ -1.03
VPS53-214ENST00000572607 XYLT2Q9H1B5 865 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 SMYD3Q9H7B4 428 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 TMEM8AQ9HCN3 771 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 ZNF334Q9HCZ1 680 aaPredicted RBP8.63□□□□□ -1.03
VPS53-214ENST00000572607 CRTAC1Q9NQ79 661 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 THG1LQ9NWX6 298 aaKnown RBP8.63□□□□□ -1.03
VPS53-214ENST00000572607 MRPS17Q9Y2R5 130 aaKnown RBP8.63□□□□□ -1.03
VPS53-214ENST00000572607 CEP250Q9BV73 2442 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 ZFHX4Q86UP3 3567 aa8.63□□□□□ -1.03
VPS53-214ENST00000572607 SOBPA7XYQ1 873 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 MAN2B1O00754 1011 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 NCAM2O15394 837 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 ATP2C2O75185 946 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 VNN1O95497 513 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 ASS1P00966 412 aaKnown RBP8.62□□□□□ -1.03
VPS53-214ENST00000572607 HLA-DRAP01903 254 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 NPR3P17342 541 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 BDNFP23560 247 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 GTF2H1P32780 548 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 VIPR2P41587 438 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 RAP1GAPP47736 663 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 GPR15P49685 360 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 MXI1P50539 228 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 PDE6CP51160 858 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 NLRP12P59046 1061 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 STARD6P59095 220 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 UBE2HP62256 183 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 UBXN2BQ14CS0 331 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 ZCWPW2Q504Y3 356 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 ARHGAP29Q52LW3 1261 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 DCAF17Q5H9S7 520 aaPredicted RBP8.62□□□□□ -1.03
VPS53-214ENST00000572607 WDR44Q5JSH3 913 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 STXBP5Q5T5C0 1151 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 SDHAF4Q5VUM1 108 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 TCERG1LQ5VWI1 586 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 KRT39Q6A163 491 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 VITQ6UXI7 678 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 ZNF852Q6ZMS4 543 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 TPRG1Q6ZUI0 275 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 DENND5BQ6ZUT9 1274 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 GAREM2Q75VX8 874 aa8.62□□□□□ -1.03
VPS53-214ENST00000572607 GPIHBP1Q8IV16 184 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms