RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 GLIS1Q8NBF1 620 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 CD99L2Q8TCZ2 262 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 NIFKQ9BYG3 293 aaKnown RBP13.89□□□□□ -0.19
VPS4A-204ENST00000566354 TRIM6Q9C030 488 aaPredicted RBP13.89□□□□□ -0.19
VPS4A-204ENST00000566354 VPS37BQ9H9H4 285 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 SHOC2Q9UQ13 582 aa13.89□□□□□ -0.19
VPS4A-204ENST00000566354 E7ENQ6 273 aa13.88□□□□□ -0.19
VPS4A-204ENST00000566354 PI4K2BG5E9Z4 385 aa13.88□□□□□ -0.19
VPS4A-204ENST00000566354 DYNC1LI2O43237 492 aaPredicted RBP13.88□□□□□ -0.19
VPS4A-204ENST00000566354 VNN1O95497 513 aa13.88□□□□□ -0.19
VPS4A-204ENST00000566354 LGALS2P05162 132 aa13.88□□□□□ -0.19
VPS4A-204ENST00000566354 ATF7P17544 494 aaPredicted RBP13.88□□□□□ -0.19
VPS4A-204ENST00000566354 TARBP2Q15633 366 aaKnown RBP13.88□□□□□ -0.19
VPS4A-204ENST00000566354 SLC5A9Q2M3M2 681 aa13.88□□□□□ -0.19
VPS4A-204ENST00000566354 HHATQ5VTY9 493 aa13.88□□□□□ -0.19
VPS4A-204ENST00000566354 MFSD7Q6UXD7 560 aa13.88□□□□□ -0.19
VPS4A-204ENST00000566354 KIRREL3Q8IZU9 778 aa13.88□□□□□ -0.19
VPS4A-204ENST00000566354 RNPEPQ9H4A4 650 aa13.88□□□□□ -0.19
VPS4A-204ENST00000566354 SMARCAD1Q9H4L7 1026 aa13.88□□□□□ -0.19
VPS4A-204ENST00000566354 SSU72Q9NP77 194 aaKnown RBP13.88□□□□□ -0.19
VPS4A-204ENST00000566354 SLCO1B3Q9NPD5 702 aa13.88□□□□□ -0.19
VPS4A-204ENST00000566354 NRBP2Q9NSY0 501 aa13.88□□□□□ -0.19
VPS4A-204ENST00000566354 GNEQ9Y223 722 aaKnown RBP13.88□□□□□ -0.19
VPS4A-204ENST00000566354 STYXL1Q9Y6J8 313 aa13.88□□□□□ -0.19
VPS4A-204ENST00000566354 TMEM191CA6NGB0 347 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 TYROBPO43914 113 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 TMEM191BP0C7N4 346 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 ZSCAN5DPP0CG00 497 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 MMP8P22894 467 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 PTPN7P35236 360 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 TRIM32Q13049 653 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 FASTKD3Q14CZ7 662 aaKnown RBP13.87□□□□□ -0.19
VPS4A-204ENST00000566354 ATP13A4Q4VNC1 1196 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 RNASEH2BQ5TBB1 312 aaKnown RBP13.87□□□□□ -0.19
VPS4A-204ENST00000566354 ZBED8Q8IZ13 594 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 C4orf33Q8N1A6 199 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 RBBP8NLQ8NC74 664 aaPredicted RBP13.87□□□□□ -0.19
VPS4A-204ENST00000566354 TRPV1Q8NER1 839 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 SPOCK2Q92563 424 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 KIF9Q9HAQ2 790 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 APOBEC3GQ9HC16 384 aaKnown RBP13.87□□□□□ -0.19
VPS4A-204ENST00000566354 SPATS2LQ9NUQ6 558 aaKnown RBP13.87□□□□□ -0.19
VPS4A-204ENST00000566354 PSMC3IPQ9P2W1 217 aaPredicted RBP13.87□□□□□ -0.19
VPS4A-204ENST00000566354 HAO1Q9UJM8 370 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 AGO2Q9UKV8 859 aaKnown RBP13.87□□□□□ -0.19
VPS4A-204ENST00000566354 GRID1Q9ULK0 1009 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 LUC7L3O95232 432 aaKnown RBP13.87□□□□□ -0.19
VPS4A-204ENST00000566354 KRT1P04264 644 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 ITGAVP06756 1048 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 MMP3P08254 477 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 CALB2P22676 271 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 TARSP26639 723 aaKnown RBP13.87□□□□□ -0.19
VPS4A-204ENST00000566354 VCPP55072 806 aaKnown RBP13.87□□□□□ -0.19
VPS4A-204ENST00000566354 RPL7AP62424 266 aaKnown RBP13.87□□□□□ -0.19
VPS4A-204ENST00000566354 EMC2Q15006 297 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 OASLQ15646 514 aaKnown RBP13.87□□□□□ -0.19
VPS4A-204ENST00000566354 SPOCD1Q6ZMY3 1216 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 SDR16C5Q8N3Y7 309 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 NKD2Q969F2 451 aaPredicted RBP13.87□□□□□ -0.19
VPS4A-204ENST00000566354 TMEM143Q96AN5 459 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 DHX33Q9H6R0 707 aaKnown RBP13.87□□□□□ -0.19
VPS4A-204ENST00000566354 RNPEPL1Q9HAU8 725 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 KLHL11Q9NVR0 708 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 FETUBQ9UGM5 382 aa13.87□□□□□ -0.19
VPS4A-204ENST00000566354 ZBTB42B2RXF5 422 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 GPR25O00155 361 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 TRAFD1O14545 582 aaPredicted RBP13.86□□□□□ -0.19
VPS4A-204ENST00000566354 LIN7AO14910 233 aaPredicted RBP13.86□□□□□ -0.19
VPS4A-204ENST00000566354 ZWINTO95229 277 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 CALB1P05937 261 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 T-ENOLP0DO92 83 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 ETS1P14921 441 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 ACOT2P49753 483 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 GEMIN4P57678 1058 aaKnown RBP13.86□□□□□ -0.19
VPS4A-204ENST00000566354 NLRP11P59045 1033 aaKnown RBP13.86□□□□□ -0.19
VPS4A-204ENST00000566354 SLC1A5Q15758 541 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 SLC45A4Q5BKX6 768 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 TFDP3Q5H9I0 405 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 HP1BP3Q5SSJ5 553 aaPredicted RBP13.86□□□□□ -0.19
VPS4A-204ENST00000566354 PCGF5Q86SE9 256 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 TLK2Q86UE8 772 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 ZNF398Q8TD17 642 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 TRAPPC12Q8WVT3 735 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 C10orf82Q8WW14 230 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 ZNF606Q8WXB4 792 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 ZBTB10Q96DT7 871 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 FAM167AQ96KS9 214 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 C16orf70Q9BSU1 422 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 POLR3FQ9H1D9 316 aaPredicted RBP13.86□□□□□ -0.19
VPS4A-204ENST00000566354 PCDH9Q9HC56 1237 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 ERAP1Q9NZ08 941 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 CPSF2Q9P2I0 782 aaKnown RBP13.86□□□□□ -0.19
VPS4A-204ENST00000566354 CASP8AP2Q9UKL3 1982 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 LDHAP00338 332 aaKnown RBP13.86□□□□□ -0.19
VPS4A-204ENST00000566354 ELNP15502 786 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 WNT7BP56706 349 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 PDIA2Q13087 525 aaKnown RBP13.86□□□□□ -0.19
VPS4A-204ENST00000566354 IRF5Q13568 498 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 WDR72Q3MJ13 1102 aa13.86□□□□□ -0.19
VPS4A-204ENST00000566354 EFHC2Q5JST6 749 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms