RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 CLUHO75153 1309 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 A0A1W2PQC6 194 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 GFPT2O94808 682 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 MICAL2O94851 1124 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 TPM2P07951 284 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 RHOP08100 348 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 POU2F2P09086 479 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 PAEPP09466 180 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 VDRP11473 427 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 MYL4P12829 197 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 BMP1P13497 986 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 CEBPBP17676 345 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 GRIK1P39086 918 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 ALDH1A3P47895 512 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 TUFMP49411 452 aaKnown RBP10.37□□□□□ -0.75
CLK3-208ENST00000562626 EPHA5P54756 1037 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 MAP3K7CLP57077 242 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 YWHAEP62258 255 aaKnown RBP10.37□□□□□ -0.75
CLK3-208ENST00000562626 TPM4P67936 248 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 ITIH3Q06033 890 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 PDE4CQ08493 712 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 GOLGA8FQ08AF8 430 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 GOLGA8DPQ0D2H9 430 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 SMARCB1Q12824 385 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 CBX2Q14781 532 aaPredicted RBP10.37□□□□□ -0.75
CLK3-208ENST00000562626 MAPRE1Q15691 268 aaKnown RBP10.37□□□□□ -0.75
CLK3-208ENST00000562626 SGO2Q562F6 1265 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 GAREM2Q75VX8 874 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 ENOSF1Q7L5Y1 443 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 NOP9Q86U38 636 aaKnown RBP10.37□□□□□ -0.75
CLK3-208ENST00000562626 TTC39CQ8N584 583 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 NEK11Q8NG66 645 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 SCAMP5Q8TAC9 235 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 SHKBP1Q8TBC3 707 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 ZNF606Q8WXB4 792 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 PSMG2Q969U7 264 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 C8orf48Q96LL4 319 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 MYADMQ96S97 322 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 DUSP16Q9BY84 665 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 STK33Q9BYT3 514 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 FAM124BQ9H5Z6 455 aaPredicted RBP10.37□□□□□ -0.75
CLK3-208ENST00000562626 PIDD1Q9HB75 910 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 WDR6Q9NNW5 1121 aaKnown RBP10.37□□□□□ -0.75
CLK3-208ENST00000562626 TJP2Q9UDY2 1190 aa10.37□□□□□ -0.75
CLK3-208ENST00000562626 NCANO14594 1321 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 KIAA1549LQ6ZVL6 1849 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 PIK3R2O00459 728 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 FAM200BP0CF97 657 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 NPR3P17342 541 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 PTPN2P17706 415 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 CHRNB2P17787 502 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 GNA15P30679 374 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 SOX5P35711 763 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 EPHB3P54753 998 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 CYP4F8P98187 520 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 IFRD2Q12894 506 aaPredicted RBP10.36□□□□□ -0.75
CLK3-208ENST00000562626 FILIP1LQ4L180 1135 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 PABPC1LQ4VXU2 614 aaKnown RBP10.36□□□□□ -0.75
CLK3-208ENST00000562626 CES5AQ6NT32 575 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 SARM1Q6SZW1 724 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 LCLAT1Q6UWP7 414 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 VSTM1Q6UX27 236 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 GET4Q7L5D6 327 aaPredicted RBP10.36□□□□□ -0.75
CLK3-208ENST00000562626 PIGZQ86VD9 579 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 PASD1Q8IV76 773 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 WDTC1Q8N5D0 677 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 DDX1Q92499 740 aaKnown RBP10.36□□□□□ -0.75
CLK3-208ENST00000562626 NDRG1Q92597 394 aaKnown RBP10.36□□□□□ -0.75
CLK3-208ENST00000562626 SECISBP2LQ93073 1101 aaKnown RBP10.36□□□□□ -0.75
CLK3-208ENST00000562626 ZSWIM3Q96MP5 696 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 ASB2Q96Q27 587 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 CD320Q9NPF0 282 aa10.36□□□□□ -0.75
CLK3-208ENST00000562626 DMAP1Q9NPF5 467 aaPredicted RBP10.36□□□□□ -0.75
CLK3-208ENST00000562626 NOCTQ9UK39 431 aaKnown RBP10.36□□□□□ -0.75
CLK3-208ENST00000562626 MAGED2Q9UNF1 606 aaPredicted RBP10.36□□□□□ -0.75
CLK3-208ENST00000562626 NCOR1O75376 2440 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 A0A1W2PRU2 124 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 LRRC53A6NM62 1247 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 C2CD4DB7Z1M9 353 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 M0QYV0 167 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 TRIM66O15016 1216 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 THAP12O43422 761 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 XYLBO75191 536 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 F11P03951 625 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 GYPCP04921 128 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 CYP11B1P15538 503 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 RFX1P22670 979 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 GABRR2P28476 465 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 MTHFRP42898 656 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 RGS7P49802 495 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 RPL10AP62906 217 aaKnown RBP10.35□□□□□ -0.75
CLK3-208ENST00000562626 TEAD2Q15562 447 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 CNGA2Q16280 664 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 ATAT1Q5SQI0 421 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 TAF3Q5VWG9 929 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 PMF1Q6P1K2 205 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 DENND5BQ6ZUT9 1274 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 RTL10Q7L3V2 364 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 BHLHA9Q7RTU4 235 aa10.35□□□□□ -0.75
CLK3-208ENST00000562626 NPAS3Q8IXF0 933 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 132.9 ms