RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 RHOT1Q8IXI2 618 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 SPATA18Q8TC71 538 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 CLEC4CQ8WTT0 213 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 TTC7AQ9ULT0 858 aaPredicted RBP22.38■■□□□ 1.17
CLN3-209ENST00000561689 SBDSQ9Y3A5 250 aaKnown RBP eCLIP22.38■■□□□ 1.17
CLN3-209ENST00000561689 TTC3P53804 2025 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 ARHGEF37A1IGU5 675 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 KRIT1O00522 736 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 ALDH2P05091 517 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 FAM200BP0CF97 657 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 PBX3P40426 434 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 SLC11A1P49279 550 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 MAP3K7CLP57077 242 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 SNX16P57768 344 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 SLC6A3Q01959 620 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 LLGL1Q15334 1064 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 INTS6LQ5JSJ4 861 aaKnown RBP22.38■■□□□ 1.17
CLN3-209ENST00000561689 THEM5Q8N1Q8 247 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 MMGT1Q8N4V1 131 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 MYLPFQ96A32 169 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 RHOBTB2Q9BYZ6 727 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 TMLHEQ9NVH6 421 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 LCMT1Q9UIC8 334 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 TMEM59LQ9UK28 342 aa22.38■■□□□ 1.17
CLN3-209ENST00000561689 RFC2P35250 354 aa22.37■■□□□ 1.17
CLN3-209ENST00000561689 RPL34P49207 117 aaKnown RBP22.37■■□□□ 1.17
CLN3-209ENST00000561689 SEL1L2Q5TEA6 688 aa22.37■■□□□ 1.17
CLN3-209ENST00000561689 TRNP1Q6NT89 227 aa22.37■■□□□ 1.17
CLN3-209ENST00000561689 LRRTM3Q86VH5 581 aa22.37■■□□□ 1.17
CLN3-209ENST00000561689 NIPA2Q8N8Q9 360 aa22.37■■□□□ 1.17
CLN3-209ENST00000561689 FNIP1Q8TF40 1166 aa22.37■■□□□ 1.17
CLN3-209ENST00000561689 HSFY1Q96LI6 401 aa22.37■■□□□ 1.17
CLN3-209ENST00000561689 MRPL9Q9BYD2 267 aaKnown RBP22.37■■□□□ 1.17
CLN3-209ENST00000561689 NT5C1B-RDH14C9J2C7 533 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 PSTPIP1O43586 416 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 TRAPPC3O43617 180 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 AP1G2O75843 785 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 CACNA2D1P54289 1103 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 FAM171BQ6P995 826 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 MTERF4Q7Z6M4 381 aaKnown RBP22.36■■□□□ 1.17
CLN3-209ENST00000561689 KCNK16Q96T55 309 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 LRRC1Q9BTT6 524 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 PARD6BQ9BYG5 372 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 TMEM30AQ9NV96 361 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 ADAM28Q9UKQ2 775 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 FAN1Q9Y2M0 1017 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 NR2E1Q9Y466 385 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 RAG1P15918 1043 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 PDGFRAP16234 1089 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 FLT3P36888 993 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 ACADSBP45954 432 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 ATP13A4Q4VNC1 1196 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 TMCO2Q7Z6W1 182 aaPredicted RBP22.36■■□□□ 1.17
CLN3-209ENST00000561689 KLHL7Q8IXQ5 586 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 ARFGAP1Q8N6T3 406 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 RXFP2Q8WXD0 754 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 KHSRPQ92945 711 aaKnown RBP eCLIP22.36■■□□□ 1.17
CLN3-209ENST00000561689 PNKPQ96T60 521 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 PKMYT1Q99640 499 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 SMOQ99835 787 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 COLEC11Q9BWP8 271 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 KLHL11Q9NVR0 708 aa22.36■■□□□ 1.17
CLN3-209ENST00000561689 C2CD4BA6NLJ0 364 aa22.35■■□□□ 1.17
CLN3-209ENST00000561689 KIAA0355O15063 1070 aa22.35■■□□□ 1.17
CLN3-209ENST00000561689 ADIGQ0VDE8 80 aa22.35■■□□□ 1.17
CLN3-209ENST00000561689 TXNRD3NBQ6F5E7 133 aa22.35■■□□□ 1.17
CLN3-209ENST00000561689 CEP57Q86XR8 500 aa22.35■■□□□ 1.17
CLN3-209ENST00000561689 ZDHHC17Q8IUH5 632 aa22.35■■□□□ 1.17
CLN3-209ENST00000561689 NDRG1Q92597 394 aaKnown RBP22.35■■□□□ 1.17
CLN3-209ENST00000561689 KRT12Q99456 494 aa22.35■■□□□ 1.17
CLN3-209ENST00000561689 GPR62Q9BZJ7 368 aa22.35■■□□□ 1.17
CLN3-209ENST00000561689 CYLDQ9NQC7 956 aa22.35■■□□□ 1.17
CLN3-209ENST00000561689 MARCH5Q9NX47 278 aa22.35■■□□□ 1.17
CLN3-209ENST00000561689 LRCH4O75427 683 aa22.34■■□□□ 1.17
CLN3-209ENST00000561689 GALTP07902 379 aa22.34■■□□□ 1.17
CLN3-209ENST00000561689 EN2P19622 333 aaPredicted RBP22.34■■□□□ 1.17
CLN3-209ENST00000561689 GPD1P21695 349 aa22.34■■□□□ 1.17
CLN3-209ENST00000561689 ZNF143P52747 638 aaPredicted RBP22.34■■□□□ 1.17
CLN3-209ENST00000561689 TSPY1Q01534 308 aa22.34■■□□□ 1.17
CLN3-209ENST00000561689 SH3PXD2AQ5TCZ1 1133 aa22.34■■□□□ 1.17
CLN3-209ENST00000561689 FAM171A1Q5VUB5 890 aa22.34■■□□□ 1.17
CLN3-209ENST00000561689 LRRC43Q8N309 656 aa22.34■■□□□ 1.17
CLN3-209ENST00000561689 B3GALT6Q96L58 329 aa22.34■■□□□ 1.17
CLN3-209ENST00000561689 HINFPQ9BQA5 517 aa22.34■■□□□ 1.17
CLN3-209ENST00000561689 OR4Q2P0C623 313 aa22.34■■□□□ 1.17
CLN3-209ENST00000561689 ACRP10323 421 aa22.34■■□□□ 1.17
CLN3-209ENST00000561689 BDNFP23560 247 aa22.34■■□□□ 1.17
CLN3-209ENST00000561689 NDUFV1P49821 464 aa22.34■■□□□ 1.17
CLN3-209ENST00000561689 C15orf59Q2T9L4 293 aaPredicted RBP22.34■■□□□ 1.17
CLN3-209ENST00000561689 TMEM173Q86WV6 379 aaPredicted RBP22.34■■□□□ 1.17
CLN3-209ENST00000561689 ZMIZ2Q8NF64 920 aa22.34■■□□□ 1.17
CLN3-209ENST00000561689 HDAC7Q8WUI4 952 aa22.34■■□□□ 1.17
CLN3-209ENST00000561689 ACSF2Q96CM8 615 aaPredicted RBP22.34■■□□□ 1.17
CLN3-209ENST00000561689 SMARCD1Q96GM5 515 aa22.34■■□□□ 1.17
CLN3-209ENST00000561689 CFAP57Q96MR6 1250 aa22.34■■□□□ 1.17
CLN3-209ENST00000561689 NAP1L3Q99457 506 aaPredicted RBP22.34■■□□□ 1.17
CLN3-209ENST00000561689 MCOLN1Q9GZU1 580 aa22.34■■□□□ 1.17
CLN3-209ENST00000561689 TCRBV7S2A1N4TA0A589 114 aa22.33■■□□□ 1.17
CLN3-209ENST00000561689 DGKIO75912 1065 aa22.33■■□□□ 1.17
CLN3-209ENST00000561689 OAZ2O95190 189 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 123.3 ms