RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 EIF3DO15371 548 aaKnown RBP eCLIP5.55□□□□□ -1.52
LDLR-209ENST00000558528 TGM5O43548 720 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 CALUO43852 315 aaPredicted RBP5.55□□□□□ -1.52
LDLR-209ENST00000558528 ZNF500O60304 480 aaPredicted RBP5.55□□□□□ -1.52
LDLR-209ENST00000558528 HBP1O60381 514 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 PQBP1O60828 265 aaKnown RBP5.55□□□□□ -1.52
LDLR-209ENST00000558528 GGPS1O95749 300 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 SERPINC1P01008 464 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 PGK2P07205 417 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 POU2F2P09086 479 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 CD40P25942 277 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 GRK3P35626 688 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 DEKP35659 375 aaKnown RBP5.55□□□□□ -1.52
LDLR-209ENST00000558528 MAGEA10P43363 369 aaPredicted RBP5.55□□□□□ -1.52
LDLR-209ENST00000558528 GEMIN4P57678 1058 aaKnown RBP5.55□□□□□ -1.52
LDLR-209ENST00000558528 RTP1P59025 263 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 FKBP3Q00688 224 aaKnown RBP5.55□□□□□ -1.52
LDLR-209ENST00000558528 CYP4A11Q02928 519 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 SOX4Q06945 474 aaPredicted RBP5.55□□□□□ -1.52
LDLR-209ENST00000558528 ACVR2BQ13705 512 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 GIT2Q14161 759 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 SIM2Q14190 667 aaPredicted RBP5.55□□□□□ -1.52
LDLR-209ENST00000558528 MYBPC2Q14324 1141 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 IQCB1Q15051 598 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 DUOXA2Q1HG44 320 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 CLEC16AQ2KHT3 1053 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 DPCR1Q3MIW9 517 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 PKDCCQ504Y2 493 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 HS1BP3Q53T59 392 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 XKR9Q5GH70 373 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 DGKKQ5KSL6 1271 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 FAM26FQ5R3K3 315 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 MFSD14CQ5VZR4 134 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 EEF1DP3Q658K8 133 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 RINT1Q6NUQ1 792 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 SWSAP1Q6NVH7 229 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 CCDC62Q6P9F0 684 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 LILRA6Q6PI73 481 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 C1orf186Q6ZWK4 172 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 DYMQ7RTS9 669 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 LUZP1Q86V48 1076 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 MYOCDQ8IZQ8 938 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 ADSSL1Q8N142 457 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 KRT78Q8N1N4 520 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 MYCT1Q8N699 235 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 TCP11Q8WWU5 503 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 STAMQ92783 540 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 HVCN1Q96D96 273 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 CEP170P1Q96L14 293 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 IFT74Q96LB3 600 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 SPATA33Q96N06 139 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 MIPEPQ99797 713 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 LRFN3Q9BTN0 628 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 TRIM5Q9C035 493 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 PCIF1Q9H4Z3 704 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 THAP9Q9H5L6 903 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 OLFML3Q9NRN5 406 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 RGL1Q9NZL6 768 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 USP36Q9P275 1121 aaKnown RBP5.55□□□□□ -1.52
LDLR-209ENST00000558528 ZNF215Q9UL58 517 aaPredicted RBP5.55□□□□□ -1.52
LDLR-209ENST00000558528 FAM184BQ9ULE4 1060 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 EXOC7Q9UPT5 735 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 STARD13Q9Y3M8 1113 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 ZDBF2Q9HCK1 2354 aa5.55□□□□□ -1.52
LDLR-209ENST00000558528 ADGRA2Q96PE1 1338 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 C5orf42Q9H799 3197 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 CHD8Q9HCK8 2581 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.54□□□□□ -1.52
LDLR-209ENST00000558528 KRBA1A5PL33 1030 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 RASA4BC9J798 803 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 H0Y8X5 98 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 KIAA0391O15091 583 aaKnown RBP5.54□□□□□ -1.52
LDLR-209ENST00000558528 MAGEB2O15479 319 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 ASAP2O43150 1006 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 RASA4O43374 803 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 KLRC4O43908 158 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 TLR5O60602 858 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 COBLO75128 1261 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 HIP1RO75146 1068 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 ALBP02768 609 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 RPLP2P05387 115 aaKnown RBP5.54□□□□□ -1.52
LDLR-209ENST00000558528 CD3EP07766 207 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 TPM1P09493 284 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 MTHFD2P13995 350 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 UBA1P22314 1058 aaKnown RBP5.54□□□□□ -1.52
LDLR-209ENST00000558528 EEF1GP26641 437 aaKnown RBP5.54□□□□□ -1.52
LDLR-209ENST00000558528 TMOD1P28289 359 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 TPP2P29144 1249 aaPredicted RBP5.54□□□□□ -1.52
LDLR-209ENST00000558528 IL12RB1P42701 662 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 PRCPP42785 496 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 PSMC4P43686 418 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 ASPAP45381 313 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 RARRES1P49788 294 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 CPT1AP50416 773 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 ZNF131P52739 623 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 SMAD3P84022 425 aaKnown RBP5.54□□□□□ -1.52
LDLR-209ENST00000558528 POU5F1Q01860 360 aaKnown RBP5.54□□□□□ -1.52
LDLR-209ENST00000558528 TNFAIP2Q03169 654 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 COASYQ13057 564 aa5.54□□□□□ -1.52
LDLR-209ENST00000558528 SEMA5AQ13591 1074 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms