RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 KCNK16Q96T55 309 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 PHOX2BQ99453 314 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 OSBPL6Q9BZF3 934 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 ELOVL4Q9GZR5 314 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 MMRN2Q9H8L6 949 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 CYP3A43Q9HB55 503 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 GCNT4Q9P109 453 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 COQ4Q9Y3A0 265 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 FARP1Q9Y4F1 1045 aaPredicted RBP10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 COL4A3Q01955 1670 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 KMT2EQ8IZD2 1858 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 C2orf78A6NCI8 922 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 ZNF840PA6NDX5 716 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 FAM170BA6NMN3 283 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 BIN1O00499 593 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 DPYSL4O14531 572 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 TNFRSF10BO14763 440 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 STX10O60499 249 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 CILPO75339 1184 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 RFX1P22670 979 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 ANXA13P27216 316 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 AVPR1AP37288 418 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 ANP32AP39687 249 aaKnown RBP10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 PPP1R2P41236 205 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 MXI1P50539 228 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 MLLT6P55198 1093 aaPredicted RBP10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 STIM1Q13586 685 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 ZNF268Q14587 947 aaPredicted RBP10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 UBXN2BQ14CS0 331 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 ARHGAP29Q52LW3 1261 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 FOXR2Q6PJQ5 311 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 ZNF852Q6ZMS4 543 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 FILIP1Q7Z7B0 1213 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 FAM35AQ86V20 835 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 YAF2Q8IY57 180 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 C12orf29Q8N999 325 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 FBXL13Q8NEE6 735 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 ZMIZ2Q8NF64 920 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 SLC35C1Q96A29 364 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 CLDN23Q96B33 292 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 FAXDC2Q96IV6 333 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 ZFYVE19Q96K21 471 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 CEP63Q96MT8 703 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 CYP2S1Q96SQ9 504 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 NELL2Q99435 816 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 FAM83CQ9BQN1 747 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 NIF3L1Q9GZT8 377 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 TDP1Q9NUW8 608 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 RAB20Q9NX57 234 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 IL37Q9NZH6 218 aa10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 ARMCX3Q9UH62 379 aaPredicted RBP10.92□□□□□ -0.66
CCDC88C-206ENST00000553437 VPS13AQ96RL7 3174 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 MAN2B1O00754 1011 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 CLSTN1O94985 981 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 CCDC130P13994 396 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 TAF10Q12962 218 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 ANGPT1Q15389 498 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 KLHL10Q6JEL2 608 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 CLEC17AQ6ZS10 378 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 NUP93Q8N1F7 819 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 ARL14EPQ8N8R7 260 aaPredicted RBP10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 SLC2A14Q8TDB8 520 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 NELFBQ8WX92 580 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 ATOH1Q92858 354 aaPredicted RBP10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 TATDN2Q93075 761 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 SMARCD1Q96GM5 515 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 HNRNPABQ99729 332 aaKnown RBP10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 SMOQ99835 787 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 IMPG2Q9BZV3 1241 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 IRF2BPLQ9H1B7 796 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 KIF9Q9HAQ2 790 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 CSNK1G1Q9HCP0 422 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 TRPC7Q9HCX4 862 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 GKN1Q9NS71 199 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 FAM86C1Q9NVL1 165 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 GTSE1Q9NYZ3 720 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 KIAA1468Q9P260 1216 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 PIAS3Q9Y6X2 628 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 CACNA1HO95180 2353 aa10.91□□□□□ -0.66
CCDC88C-206ENST00000553437 ATP8B3O60423 1300 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 TRAV19A0A0A6YYK7 116 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 FAM92AA1XBS5 289 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 AP1G2O75843 785 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 BEST1O76090 585 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 OLFM2O95897 454 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 USP17L7P0C7H9 530 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 HDCP19113 662 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 CD58P19256 250 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 RPS9P46781 194 aaKnown RBP10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 SOX9P48436 509 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 ZXDBP98169 803 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 PLCB2Q00722 1185 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 TNK2Q07912 1038 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 ZNF77Q15935 545 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 CAMK4Q16566 473 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 DCAF17Q5H9S7 520 aaPredicted RBP10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 WDR44Q5JSH3 913 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 TCERG1LQ5VWI1 586 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 TXNDC11Q6PKC3 985 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 FRMD5Q7Z6J6 570 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms